View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3001_low_14 (Length: 440)
Name: NF3001_low_14
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 47179067 - 47179458
Alignment:
| Q |
1 |
cttcaggtttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttctacacattcaaacacaagttagagaaaaaattgttctctt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47179067 |
cttcagatttttatgacagccgtatccgattttcatggtttcaatactaaaaatactttct------------------tagagaaaaaattgttctctt |
47179148 |
T |
|
| Q |
101 |
atatactttggtatcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaaaaatcaattcaagttaaatgaggtttagtt |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47179149 |
atatactttggtttcaacagaaccaaaattggagatcattgttctttaaattccaacttggttctaacaaaaatcaattcaagttaaatgaggttcagtt |
47179248 |
T |
|
| Q |
201 |
gtttta-nnnnnnnactcaatttc-aaatatttttccaccaaaactcaacg-nnnnnnntaggttttataattaacgtttttattttaacactaacacat |
297 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47179249 |
gttttattttttttactcaatttcaaaatatttttccactaaaactcaacgaaaaaaaataggttttataattaacgtttttattttaacgctaacacat |
47179348 |
T |
|
| Q |
298 |
catcatcaaagatcatcaaccactactccaaccaccattctaacaaacaacaaacaaacacacggaccaccacccgataaccactcctacaacctctaac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
47179349 |
catcatcaaagatcatcaaccactactccaaccaccattct-----------aacaaacacacatatcaccacccgataaccactcctaccacctctaac |
47179437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University