View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_15 (Length: 433)
Name: NF3001_low_15
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 45 - 419
Target Start/End: Complemental strand, 53579040 - 53578660
Alignment:
| Q |
45 |
agaggtgcagagaaagggatcttaaactcttc---atcatcatc---atcactttgcattctctcttcatcagaatagtaattatctatttcttctggtg |
138 |
Q |
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| T |
53579040 |
agaggtgcagagaaagggatcttaaactcttcttcatcatcatcatcatcactttgcattctctcttcatcagaatagtaattatctatttcttctggtg |
53578941 |
T |
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| Q |
139 |
ctacttgagccttccaatcaaaattagcaaaagtgtcacgtccacttgcaaaacgtttcatttgactcacatgtgttgctctttcctcaattgcatattt |
238 |
Q |
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| T |
53578940 |
ctacttgagccttccaatcaaaattagcaaaagtgtcacgtccacttgcaaaacgtttcatttgactcacatgtgttgctctttcctcaattgcatattt |
53578841 |
T |
|
| Q |
239 |
tttatcttgaactgcacatgcatctgatttccttcttccttcagattttggtttcccaacatgaaacaacatcttttgaaaagtgtttacatgtttcttc |
338 |
Q |
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| T |
53578840 |
tttatcttgaactgcacatgcatctgatttccttcttccttcagattttggtttcccaacatgaaacaacatcttttgaaaagtgtttacatgtttcttc |
53578741 |
T |
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| Q |
339 |
acttccatgtctttcaannnnnnnatttgtttcttcttgtgcttgatttgtcccatgcacgatatttttggtgaagtgggt |
419 |
Q |
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| T |
53578740 |
acttccatgtctttcgatttttttatttgtttcttcttgtgcttgatttgtcccatgcacgatatttttggtgaagtgggt |
53578660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 15524935 - 15524886
Alignment:
| Q |
370 |
tcttcttgtgcttgatttgtcccatgcacgatatttttggtgaagtgggt |
419 |
Q |
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| T |
15524935 |
tcttcttaagcttgatctctcccatgcacgatatttttggtgaagtgggt |
15524886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 18818414 - 18818544
Alignment:
| Q |
87 |
tcactttgcattctctcttcatcagaatagtaattatctatttcttctggtgctacttgagccttccaatcaaaattagcaaaagtgtc---acgtccac |
183 |
Q |
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|||| |||||| ||||||||||| |||| ||||||| |||||| |||| |||| |||||||||||||||||| || |||||||||| || |||| |
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| T |
18818414 |
tcaccttgcatcctctcttcatccaaataataattatatatttcctctgcaactacatgagccttccaatcaaaactaacaaaagtgtcgcaacaaccac |
18818513 |
T |
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| Q |
184 |
ttgcaaaacgtttcatttgactcacatgtgt |
214 |
Q |
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| T |
18818514 |
ttgcaaaacttttcaatcgactcacatgtgt |
18818544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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