View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_low_17 (Length: 420)

Name: NF3001_low_17
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_low_17
NF3001_low_17
[»] chr3 (3 HSPs)
chr3 (7-399)||(4649304-4649694)
chr3 (194-335)||(32142471-32142612)
chr3 (275-394)||(7952717-7952837)
[»] scaffold0078 (2 HSPs)
scaffold0078 (197-403)||(13665-13871)
scaffold0078 (265-339)||(6013-6086)
[»] chr2 (13 HSPs)
chr2 (197-403)||(6565765-6565971)
chr2 (269-403)||(17366469-17366604)
chr2 (239-403)||(12406667-12406832)
chr2 (197-402)||(25715974-25716180)
chr2 (271-344)||(3577373-3577445)
chr2 (197-328)||(25863881-25864011)
chr2 (197-345)||(17367745-17367893)
chr2 (271-345)||(30238553-30238626)
chr2 (129-173)||(30238412-30238456)
chr2 (197-336)||(25857051-25857190)
chr2 (349-403)||(13067344-13067398)
chr2 (129-173)||(3577542-3577586)
chr2 (197-257)||(25473804-25473864)
[»] chr6 (3 HSPs)
chr6 (197-403)||(16690982-16691189)
chr6 (269-330)||(21297384-21297444)
chr6 (221-371)||(16663118-16663268)
[»] chr1 (2 HSPs)
chr1 (197-392)||(32638048-32638244)
chr1 (197-403)||(18424231-18424437)
[»] chr4 (1 HSPs)
chr4 (197-371)||(11569322-11569498)
[»] chr7 (2 HSPs)
chr7 (197-403)||(32184952-32185157)
chr7 (86-290)||(24040077-24040288)
[»] chr8 (2 HSPs)
chr8 (218-393)||(8908534-8908709)
chr8 (305-403)||(15962411-15962510)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 4649304 - 4649694
Alignment:
Q  7 tcgaagaatatcaaataagaattcaaaacaagtgataaacagggttctaaatcatataatattggctttgataccacatatgtgagaagatattgaatat 106  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4649304 tcgaataaaatcaaataagaattcaaaacaagtgataaacagggttctaaatcatataatattggctttgataccacat--gtgagaagatattgaatat 4649401  T
Q  107 tatatgagatagaacatacttacttgttggtagcattgtcatggatgagtcttcctttgcctttcacggtgctccagttcttgatgtggtaaaccactaa 206  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  4649402 tatacgagatagaacatacttacttgttggtagcaatgtcatggatgagtcttcctttgcctttcacggtgctccagttctcgatgtggtaaaccactga 4649501  T
Q  207 tgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctagtgtttggacc 306  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  4649502 tgagcagaaacatcagagtgatggaaaatggaacctagcctttctatttattattgtgcaatcctagttaccacccatcatggatcctagtgtttggacc 4649601  T
Q  307 tacaatttgtttctacacaaatcatattaagtgcccaaatcacattatatattgatcacttttataagagcctaagcatcatcaaatagatca 399  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4649602 tacaatttatttctacacaaatcatattaagtgcccaaatcacattatatattgatcacttttattagagcctaagcatcatcaaatagatca 4649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 32142471 - 32142612
Alignment:
Q  194 ggtaaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcc 293  Q
    ||||||||||||||||||| ||   |||||||||| | | | |  ||||| ||| ||||||||| |  ||  || | ||||||||| ||||||||   ||    
T  32142471 ggtaaaccactaatgagcagaatagtcagagtgatagcagaggagacctaacctctctatttataaccgtgtaaccttaggtaccaaccatcatgagccc 32142570  T
Q  294 tagtgtttggacctacaatttgtttctacacaaatcatatta 335  Q
    ||||||| || |||||| ||||||||||||||||||||||||    
T  32142571 tagtgttcggtcctacactttgtttctacacaaatcatatta 32142612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 394
Target Start/End: Original strand, 7952717 - 7952837
Alignment:
Q  275 taccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagtg-cccaaatcacattatatattgatcacttttataa 373  Q
    |||||||||||||||| |||| ||||||  | |||| | ||||| |||||||||||||||| |||  | ||| |  |||||  ||||||||||||||| |    
T  7952717 taccacccatcatggaccctaatgtttgagcatacactatgtttttacacaaatcatattaggtgttcaaaaactaattattaattgatcacttttatta 7952816  T
Q  374 gagcctaagcatcatcaaata 394  Q
      || ||||||||||||||||    
T  7952817 tggcataagcatcatcaaata 7952837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 197 - 403
Target Start/End: Complemental strand, 13871 - 13665
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||||||   |||||||||||| ||| || ||||||||| ||||||||| |  || ||| |||||||||| ||||||||||  |||||    
T  13871 aaaccactaatgagcataatagtcagagtgatggcaaaggggacctagcctctctatttataaccgtgcaaccctaggtaccgcccatcatgg-gcctag 13773  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgc-ccaaatcacattatatattgatcacttttataagagcctaagcatcatcaaatag 395  Q
    ||| | | |||||| | ||||||||||||||||||||||||||| | ||| | |||||| |||||||||||||||| || |||||||||||||||||| |    
T  13772 tgtctaggcctacattatgtttctacacaaatcatattaagtgctcaaaagcccattatttattgatcacttttattagggcctaagcatcatcaaatgg 13673  T
Q  396 atcacaac 403  Q
    ||||||||    
T  13672 atcacaac 13665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 6086 - 6013
Alignment:
Q  265 caatcctaggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagtg 339  Q
    ||||||||||||||| |||||||||  ||||||||  || |||||| | ||||||||||||||||| ||||||||    
T  6086 caatcctaggtaccatccatcatggg-cctagtgtccgggcctacactatgtttctacacaaatcagattaagtg 6013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 197 - 403
Target Start/End: Complemental strand, 6565971 - 6565765
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||| ||   |||| ||||||| ||| || ||||||||| ||||||||| || || ||| |||||||||||||||||||||  |||||    
T  6565971 aaaccactaatgagcagaatagtcagggtgatggcaaaggggacctagcctctctatttataatcgtgcaaccctaggtaccacccatcatgg-gcctag 6565873  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgccc-aaatcacattatatattgatcacttttataagagcctaagcatcatcaaatag 395  Q
    ||| ||| |||||| | ||||||||||||||||| ||||||||||| ||| | |||||| ||| |||||||||||| || |||||||||||||||||| |    
T  6565872 tgtctgggcctacactatgtttctacacaaatcagattaagtgcccaaaagcccattatttatcgatcacttttattagggcctaagcatcatcaaatgg 6565773  T
Q  396 atcacaac 403  Q
    ||||||||    
T  6565772 atcacaac 6565765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 403
Target Start/End: Complemental strand, 17366604 - 17366469
Alignment:
Q  269 cctaggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagtgccc-aaatcacattatatattgatcactt 367  Q
    |||||||||||||||||||||  |||||||||||  |||||| | ||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||    
T  17366604 cctaggtaccacccatcatgggccctagtgtttgagcctacactgtgtttctacacaaatcatattaagtgcccaaaagcccattatttattgatcactt 17366505  T
Q  368 ttataagagcctaagcatcatcaaatagatcacaac 403  Q
    | || |  |||||||||||||||||| |||||||||    
T  17366504 tcattattgcctaagcatcatcaaatggatcacaac 17366469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 403
Target Start/End: Complemental strand, 12406832 - 12406667
Alignment:
Q  239 acctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagt 338  Q
    ||||||||| ||||||||| || || |||   ||| ||||| |||||||||  ||| |||||||| |||||| |||||||||||||||| ||||||||||    
T  12406832 acctagcctctctatttataatcgtgcaactatagctaccatccatcatgggccctggtgtttgggcctacactttgtttctacacaaaccatattaagt 12406733  T
Q  339 gcccaa-atcacattatatattgatcacttttataagagcctaagcatcatcaaatagatcacaac 403  Q
    | |||| | | |||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  12406732 gtccaagagctcattatctattgatcatttttattagagcctaaacatcatcaaatagatcacaac 12406667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 197 - 402
Target Start/End: Complemental strand, 25716180 - 25715974
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||||||  | |||||| |||| ||| ||   |||| || |||||||||  | || ||| |||||||||||||||||||||  ||||     
T  25716180 aaaccactaatgagcataattaacagagtaatggcaaagggggtctagtctctctatttatattcgtgcaaccctaggtaccacccatcatgggccctat 25716081  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtg-cccaaatcacattatatattgatcacttttataagagcctaagcatcatcaaatag 395  Q
    |||| |   ||| | ||||| |||||||| ||||||||||||| || ||| | ||||||  |||||||||||| || || || ||||||||||||||| |    
T  25716080 tgttcgagactatactttgtctctacacagatcatattaagtgtccaaaagctcattatccattgatcactttcattagggcttaagcatcatcaaatgg 25715981  T
Q  396 atcacaa 402  Q
    |||||||    
T  25715980 atcacaa 25715974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 3577445 - 3577373
Alignment:
Q  271 taggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagtgcccaa 344  Q
    |||| ||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||||||| ||||    
T  3577445 taggcaccacccatcatgga-cctagtgtttgggcctaccatatgtttctacacaaatcagattaagtggccaa 3577373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 25863881 - 25864011
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    ||||||||||| |||||||   | |||||||||| ||| ||| |||||||| ||||||||| |  || |||  ||||||||||||||||||| | ||||     
T  25863881 aaaccactaataagcataattgttagagtgatggcaaaggga-cctagcctctctatttataaccgtgcaactctaggtaccacccatcatgaaccctaa 25863979  T
Q  297 tgtttggacctacaatttgtttctacacaaat 328  Q
    |||| || ||||||  ||||||||||||||||    
T  25863980 tgttcgggcctacaccttgtttctacacaaat 25864011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 17367893 - 17367745
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    ||||||||||||||||  |   |||||||||||| |||  | ||||||||| ||||||||| |  || ||| |||||||||||| ||||||||  |||||    
T  17367893 aaaccactaatgagcaggatagtcagagtgatggcaaagaggacctagcctctctatttataaccgtgcaaccctaggtaccacgcatcatgggccctag 17367794  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgcccaaa 345  Q
    |||||    ||||| |   |||||||||||||||||||||  |||||||    
T  17367793 tgtttaagactacactagttttctacacaaatcatattaaaagcccaaa 17367745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 30238553 - 30238626
Alignment:
Q  271 taggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatcatattaagtgcccaaa 345  Q
    |||| |||||| |||||||  |||||||||||| ||||| || ||||||||||||||||| |||||||| |||||    
T  30238553 taggcaccaccaatcatggg-cctagtgtttgggcctaccatatgtttctacacaaatcagattaagtggccaaa 30238626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 30238412 - 30238456
Alignment:
Q  129 cttgttggtagcattgtcatggatgagtcttcctttgcctttcac 173  Q
    |||||||||| || |||||||| ||||||||||||||||||||||    
T  30238412 cttgttggtaccaatgtcatggttgagtcttcctttgcctttcac 30238456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 25857051 - 25857190
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||| ||    ||||||||||| ||| || || || ||| ||||||||| |  || ||| ||  |||||||||||||||||  |||||    
T  25857051 aaaccactaatgagcagaattgccagagtgatggcaaaggggacttatcctatctatttataaccgtgcaacccagggtaccacccatcatgggccctag 25857150  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaa 336  Q
    |||| || || | | |||| |||||||||||| |||||||    
T  25857151 tgttcgggccaagactttgcttctacacaaattatattaa 25857190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 13067344 - 13067398
Alignment:
Q  349 cattatatattgatcacttttataagagcctaagcatcatcaaatagatcacaac 403  Q
    |||||| |||||||||||||||| || | ||||||||||||||||  ||||||||    
T  13067344 cattatctattgatcacttttattagtgtctaagcatcatcaaatgaatcacaac 13067398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 3577586 - 3577542
Alignment:
Q  129 cttgttggtagcattgtcatggatgagtcttcctttgcctttcac 173  Q
    |||||||||| |  |||||||| ||||||||||||||||||||||    
T  3577586 cttgttggtaccgatgtcatggctgagtcttcctttgcctttcac 3577542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 25473864 - 25473804
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttat 257  Q
    |||||||||||||||| ||   | |||||||||||||| || ||||| |||||||||||||    
T  25473864 aaaccactaatgagcagaatagttagagtgatggaaaaggggacctaacctttctatttat 25473804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 403
Target Start/End: Complemental strand, 16691189 - 16690982
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||| ||   || ||||||||| ||| || ||||||||| ||||||||| |  || ||| |||||||||||||||||||||   ||||    
T  16691189 aaaccactaatgagcagaatagtctgagtgatggcaaaggggacctagcctctctatttataaccgtgcaaccctaggtaccacccatcatgg-gactag 16691091  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgccc--aaatcacattatatattgatcacttttataagagcctaagcatcatcaaata 394  Q
    || |||| |||||| | ||||||||||||||||| ||||||| |||  ||| | |||||| ||||||||| |||||| || || |||||||||||||||     
T  16691090 tgattgggcctacactatgtttctacacaaatcagattaagtacccaaaaagcccattatctattgatcatttttattagggcataagcatcatcaaatg 16690991  T
Q  395 gatcacaac 403  Q
    |||||||||    
T  16690990 gatcacaac 16690982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 21297384 - 21297444
Alignment:
Q  269 cctaggtaccacccatcatggatcctagtgtttggacctacaatttgtttctacacaaatca 330  Q
    |||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  21297384 cctaagtaccacccatcatgga-cctagtgtttggacctacactatgtttctacacaaatca 21297444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 371
Target Start/End: Complemental strand, 16663268 - 16663118
Alignment:
Q  221 agagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctagtgtttggacctacaatttgtttct 320  Q
    |||||||||| ||| || ||||| ||| |||| |||| |  || ||||| |||||||||||||||||||  ||||||| |||   ||||| | |||||||    
T  16663268 agagtgatggcaaaggggacctaacctctctaattataaccgtgcaatc-taggtaccacccatcatggg-cctagtgattgcgtctacactatgtttct 16663171  T
Q  321 acacaaatcatattaagtgccc--aaatcacattatatattgatcacttttat 371  Q
    |||||||||| |||||||||||  ||| | |||||| || |||||||||||||    
T  16663170 acacaaatcaaattaagtgcccaaaaagctcattatctactgatcacttttat 16663118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 392
Target Start/End: Complemental strand, 32638244 - 32638048
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||  ||   |||||||||||| ||| || ||||||||| ||||||||| |   | ||| ||||||||| |||||||||||  |||||    
T  32638244 aaaccactaatgagcgaaatagtcagagtgatggcaaaggggacctagcctctctatttataaccatgcaaccctaggtactacccatcatggg-cctag 32638146  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgccc--aaatcacattatatattgatcacttttataagagcctaagcatcatcaaa 392  Q
    ||||||| |||||| | ||||||||||||||||| |||||||||||  ||||| |||||| |||| |||||||| || || || ||||||||||||||    
T  32638145 tgtttgggcctacactatgtttctacacaaatcagattaagtgcccaaaaatcccattatctattaatcactttcattagggcataagcatcatcaaa 32638048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 403
Target Start/End: Original strand, 18424231 - 18424437
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    ||||| |||||||||||||   ||||||||| || ||| || ||||||||| ||||||||| |  ||  || | ||||  |||||||||||||  |||||    
T  18424231 aaaccgctaatgagcataattgtcagagtgaaggcaaaggggacctagcctctctatttataaccgtgtaa-cataggccccacccatcatggg-cctag 18424328  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgccc--aaatcacattatatattgatcacttttataagagcctaagcatcatcaaata 394  Q
    ||||||| |||||| | ||||||||||||||||| |||||||||||  ||| | |||||| |||||||||||||||| || || ||||||||||||||      
T  18424329 tgtttgggcctacactatgtttctacacaaatcagattaagtgcccaaaaagcccattatctattgatcacttttatcagggcataagcatcatcaaaat 18424428  T
Q  395 gatcacaac 403  Q
    |||||||||    
T  18424429 gatcacaac 18424437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 11569322 - 11569498
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    ||||||||||||||||||| | |||||||||||| |||  | ||  | ||| ||||||||| |  || ||| ||||||||||||||||||| |  |||||    
T  11569322 aaaccactaatgagcataatcgtcagagtgatggcaaagaggacacaacctctctatttataaccgtgcaaccctaggtaccacccatcataggccctag 11569421  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgccc--aaatcacattatatattgatcacttttat 371  Q
    |||| ||||||||| | ||||||||||||||||| |||||||| ||  ||| | |||||| ||||||||||||||||    
T  11569422 tgttcggacctacactctgtttctacacaaatcagattaagtgaccaaaaagctcattatctattgatcacttttat 11569498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 403
Target Start/End: Original strand, 32184952 - 32185157
Alignment:
Q  197 aaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctag 296  Q
    |||||||||||||||| |    ||||||||| || ||| ||| |||||||| ||||||||| || || ||| |||||||||||||||||||| | ||| |    
T  32184952 aaaccactaatgagcagagtagtcagagtgacggcaaaggga-cctagcctctctatttataatcgtgcaaccctaggtaccacccatcatg-agccttg 32185049  T
Q  297 tgtttggacctacaatttgtttctacacaaatcatattaagtgcccaaatca-cattatatattgatcacttttataagagcctaagcatcatcaaatag 395  Q
    ||||||| | ||||   ||||||||||||||||| ||||||||||||||    |||||| |||||||||||||||| | | | ||| ||||||||||| |    
T  32185050 tgtttgggcatacaccatgtttctacacaaatcagattaagtgcccaaaaattcattatctattgatcacttttattaaaacttaaacatcatcaaatgg 32185149  T
Q  396 atcacaac 403  Q
    ||||||||    
T  32185150 atcacaac 32185157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 24040077 - 24040288
Alignment:
Q  86 atgtgagaagatattgaatattatatgagatagaacatacttacttgttggtagcattgtcatggatgagtcttcctttgcctttcacggtgctccagtt 185  Q
    ||||||||| ||||| ||||||||||||||||||||| | ||| |||||| ||    |||||||| ||| ||||||||||||||||||  ||||||| ||    
T  24040077 atgtgagaaaatattcaatattatatgagatagaacaca-ttagttgttgatactgatgtcatggctgaatcttcctttgcctttcaca-tgctccattt 24040174  T
Q  186 ctt---------gatgtggtaaaccactaatgagcataaacatcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggta 276  Q
    |||         |||| || |||||||||||||| | ||  |||| |||||||  |||||| | ||||| ||||||||||| | | | ||||||||||||    
T  24040175 cttaggatttttgatgaggcaaaccactaatgagtagaattatcatagtgatgacaaatgggatctagcatttctatttataactatgcaatcctaggta 24040274  T
Q  277 ccacccatcatgga 290  Q
    ||||| ||||||||    
T  24040275 ccaccaatcatgga 24040288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 393
Target Start/End: Complemental strand, 8908709 - 8908534
Alignment:
Q  218 atcagagtgatggaaaatggaacctagcctttctatttattattgtacaatcctaggtaccacccatcatggatcctagtgtttggacctacaatttgtt 317  Q
    ||||||||||||| ||| |||| |||| |||||||||||| |  || ||| |||||| ||||||||||||||  |||||| ||||| |||||  | ||||    
T  8908709 atcagagtgatggcaaagggaatctagtctttctatttataaccgtgcaaccctaggcaccacccatcatgg-gcctagtatttgggcctacgctatgtt 8908611  T
Q  318 tctacacaaatcatattaagtgccc-aaatcacattatatattgatcacttttataagagcctaagcatcatcaaat 393  Q
    ||||||||||| | ||||||||||| ||| | ||||||  ||||||||||||||| |  |||||||| |||||||||    
T  8908610 tctacacaaattagattaagtgcccaaaaccccattattaattgatcacttttattaaggcctaagcttcatcaaat 8908534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 403
Target Start/End: Original strand, 15962411 - 15962510
Alignment:
Q  305 cctacaatttgtttctacacaaatcatattaagtgcccaaat-cacattatatattgatcacttttataagagcctaagcatcatcaaatagatcacaac 403  Q
    |||||| ||||| | |||||||||||||||||||| |||||| | |||||| ||| ||| |||||||| || ||||||||||||||||||  ||||||||    
T  15962411 cctacactttgtatttacacaaatcatattaagtgtccaaatactcattatctatcgataacttttattagggcctaagcatcatcaaatgtatcacaac 15962510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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