View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_low_18 (Length: 420)

Name: NF3001_low_18
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_low_18
NF3001_low_18
[»] chr3 (4 HSPs)
chr3 (64-404)||(38559600-38559937)
chr3 (3-53)||(38559533-38559583)
chr3 (361-401)||(9342496-9342535)
chr3 (366-398)||(24088304-24088336)
[»] chr1 (4 HSPs)
chr1 (353-401)||(50372351-50372399)
chr1 (364-399)||(912333-912368)
chr1 (370-404)||(4770635-4770669)
chr1 (364-400)||(28039861-28039897)
[»] chr4 (1 HSPs)
chr4 (367-402)||(48824920-48824955)
[»] chr8 (2 HSPs)
chr8 (364-398)||(7404804-7404838)
chr8 (361-402)||(8078098-8078139)
[»] chr6 (1 HSPs)
chr6 (353-402)||(8138448-8138497)
[»] chr7 (1 HSPs)
chr7 (364-400)||(10423985-10424021)
[»] chr5 (1 HSPs)
chr5 (373-401)||(24443109-24443137)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 64 - 404
Target Start/End: Original strand, 38559600 - 38559937
Alignment:
Q  64 aaggtaaaagtcaacgtcttggatgtaaaattgaatatctgatttcatataagtgaatgagtttataaatctaatgtctaa-gttttggttgaacatgtg 162  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||    
T  38559600 aaggtaaaagtcaacgtcttggatgtaaaattgaatatttgatttcatataagtgaatgagtctataaatctaatgtctaaagctttggttgaacatgtg 38559699  T
Q  163 atatcaaactcggttgatgtttttcgtgcttcacttatgacccaacaataaattccacatgtctggttgctcaaaccaaacaatgattttcttgttcccc 262  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  38559700 atatcaaactacgttgatgtttttcgtgcttcacttatgacccaacaataaattccacacgtctggttgctcaaaccaaacgatgattttcatgttcccc 38559799  T
Q  263 taattaaccatcaagaacaattgaaaattatttgtatagaagtagtagtacaagaattgagaaatatatcagcagcaagnnnnnnnnnnngtggcggttg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||            | | |||||    
T  38559800 taattaaccatcaagaacaattgaaaattatttgtatagaagtagtagtacaagaattgagaaatatatcagcggcaagtttttttt----ttgtggttg 38559895  T
Q  363 aggttcaaacctcagaccttatatatattatgcattgttcat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38559896 aggttcaaacctcagaccttatatatattatgcattgttcat 38559937  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 38559533 - 38559583
Alignment:
Q  3 atcttatgcagaattgaagtcttgatgttataatatatttcattttcgctt 53  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  38559533 atcttatgcagagttgaaatcttgatgctataatatatttcattttcgctt 38559583  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 9342535 - 9342496
Alignment:
Q  361 tgaggttcaaacctcagaccttatatatattatgcattgtt 401  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  9342535 tgaggttcaaac-tcagatcttatatatattatgcattgtt 9342496  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 24088304 - 24088336
Alignment:
Q  366 ttcaaacctcagaccttatatatattatgcatt 398  Q
    |||||||||||||| ||||||||||||||||||    
T  24088304 ttcaaacctcagacattatatatattatgcatt 24088336  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 401
Target Start/End: Original strand, 50372351 - 50372399
Alignment:
Q  353 gtggcggttgaggttcaaacctcagaccttatatatattatgcattgtt 401  Q
    |||| ||||||||||  |||||||||||| |||||||||||||||||||    
T  50372351 gtggtggttgaggtttgaacctcagacctgatatatattatgcattgtt 50372399  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 399
Target Start/End: Complemental strand, 912368 - 912333
Alignment:
Q  364 ggttcaaacctcagaccttatatatattatgcattg 399  Q
    |||||||||||||||||||||||||||||| |||||    
T  912368 ggttcaaacctcagaccttatatatattatacattg 912333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 4770635 - 4770669
Alignment:
Q  370 aacctcagaccttatatatattatgcattgttcat 404  Q
    ||||||||||||||||||||| |||||||||||||    
T  4770635 aacctcagaccttatatatatcatgcattgttcat 4770669  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 28039861 - 28039897
Alignment:
Q  364 ggttcaaacctcagaccttatatatattatgcattgt 400  Q
    |||||||||||||||||||  ||||||||||||||||    
T  28039861 ggttcaaacctcagaccttgcatatattatgcattgt 28039897  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 367 - 402
Target Start/End: Original strand, 48824920 - 48824955
Alignment:
Q  367 tcaaacctcagaccttatatatattatgcattgttc 402  Q
    |||||||||||||||||||||||||||||| |||||    
T  48824920 tcaaacctcagaccttatatatattatgcactgttc 48824955  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 7404838 - 7404804
Alignment:
Q  364 ggttcaaacctcagaccttatatatattatgcatt 398  Q
    ||||| |||||||||||||||||||||||||||||    
T  7404838 ggttcgaacctcagaccttatatatattatgcatt 7404804  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 8078098 - 8078139
Alignment:
Q  361 tgaggttcaaacctcagaccttatatatattatgcattgttc 402  Q
    |||||||| ||| |||||||||| ||||||||||||||||||    
T  8078098 tgaggttcgaacatcagaccttacatatattatgcattgttc 8078139  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 8138448 - 8138497
Alignment:
Q  353 gtggcggttgaggttcaaacctcagaccttatatatattatgcattgttc 402  Q
    |||| ||||||||||  |||| ||||||||| ||||||||||||||||||    
T  8138448 gtggtggttgaggtttgaaccccagaccttacatatattatgcattgttc 8138497  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 10424021 - 10423985
Alignment:
Q  364 ggttcaaacctcagaccttatatatattatgcattgt 400  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  10424021 ggttcgaacctcagaccttatatatattatgcgttgt 10423985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 401
Target Start/End: Original strand, 24443109 - 24443137
Alignment:
Q  373 ctcagaccttatatatattatgcattgtt 401  Q
    |||||||||||||||||||||||||||||    
T  24443109 ctcagaccttatatatattatgcattgtt 24443137  T

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