View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_low_19 (Length: 395)

Name: NF3001_low_19
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_low_19
NF3001_low_19
[»] chr6 (1 HSPs)
chr6 (19-386)||(8159068-8159435)
[»] chr4 (2 HSPs)
chr4 (57-267)||(18701668-18701878)
chr4 (267-300)||(18701618-18701651)
[»] chr3 (1 HSPs)
chr3 (72-350)||(4084080-4084374)
[»] chr8 (9 HSPs)
chr8 (72-350)||(44312207-44312489)
chr8 (78-350)||(44301308-44301596)
chr8 (73-258)||(43896073-43896255)
chr8 (78-264)||(44306520-44306704)
chr8 (94-234)||(43895568-43895705)
chr8 (94-234)||(44305992-44306129)
chr8 (353-388)||(44312137-44312172)
chr8 (353-387)||(43895856-43895890)
chr8 (356-385)||(44306284-44306313)
[»] chr5 (1 HSPs)
chr5 (75-250)||(35856845-35857017)
[»] chr7 (1 HSPs)
chr7 (135-178)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 8159068 - 8159435
Alignment:
Q  19 ctcgtttgggtaagagacgcgaacatgatgagagtgaggaagttaatgaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttga 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159068 ctcgtttgggtaagagacgtgaacatgatgagagtgaggaagttgataaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttga 8159167  T
Q  119 tgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8159168 tgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgctgatgttcctgcttattcggtctcaaaagattgt 8159267  T
Q  219 ggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159268 ggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagctttgcaatggtttgtttcttatttataacttatt 8159367  T
Q  319 ttttatggtgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctctg 386  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159368 ttttatgctgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctctg 8159435  T

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Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 18701878 - 18701668
Alignment:
Q  57 gaagttaatgaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccg---atg 153  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||    
T  18701878 gaagttaataaaatcgaggaagttgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatg 18701779  T
Q  154 ggtctgttagatatataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcat 253  Q
    ||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||||  ||  | | |||||||||||||||||||||||||||    
T  18701778 ggtctgttagatatacaatgacttctgct---gatgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcat 18701682  T
Q  254 tctagagaaataat 267  Q
    ||||||||||||||    
T  18701681 tctagagaaataat 18701668  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 18701651 - 18701618
Alignment:
Q  267 ttggtttggtttattagctttgcaatggtttgtt 300  Q
    ||||||||||||||||||||||||||||||||||    
T  18701651 ttggtttggtttattagctttgcaatggtttgtt 18701618  T

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Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 72 - 350
Target Start/End: Complemental strand, 4084374 - 4084080
Alignment:
Q  72 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtt------tgatgctcatcttgaatctggagatacttttaccgatgggtctgttagat 165  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||      |||||||  |||| ||||||||||||||||||| || |||||| ||||||    
T  4084374 aaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagat 4084275  T
Q  166 atataatgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaat- 264  Q
    ||| ||||||||||||   ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||| ||||||||     
T  4084274 atacaatgacttctgc---cgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatg 4084178  T
Q  265 ------------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 350  Q
                | ||||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4084177 atcctacttaccagttggtttggcttgttagctttactatggtttgttgcttatttataacttattttttatggtgaatttgttgcttaattattgat 4084080  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 72 - 350
Target Start/End: Complemental strand, 44312489 - 44312207
Alignment:
Q  72 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  44312489 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataa 44312390  T
Q  172 tgacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaat------- 264  Q
    ||||||   ||||||||||||        || |||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||| |           
T  44312389 tgactt---ctgccgatgttc--------tccgtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatccta 44312301  T
Q  265 -------aattggtttggtttattagctttgcaatggtttgtttcttatttataactta-ttttttatggtgaatctgttgcttaattattgat 350  Q
           | ||||||||| || ||| || |||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  44312300 cttcgccagttggtttggcttgttaactatgctttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgat 44312207  T

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Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 78 - 350
Target Start/End: Complemental strand, 44301596 - 44301308
Alignment:
Q  78 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 177  Q
    ||||||||||||||||| |||||||||||| ||||||| | |  |  |||| ||||||||||||||||||| ||||||||||||||||||| |||| |||    
T  44301596 gttgatgaagctcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtctt 44301497  T
Q  178 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattc-----attctagagaaat-------- 264  Q
    ||||   |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     |||| || |||||            
T  44301496 ctgc---cgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctac 44301400  T
Q  265 ------aattggtttggtttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 350  Q
          | || |||||| || |||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  44301399 ttacccagtttgtttggcttgttagctttgctatgttttgttgcttatttataacttattttttatggtaaatctgctgcttaattattgat 44301308  T

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Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 73 - 258
Target Start/End: Complemental strand, 43896255 - 43896073
Alignment:
Q  73 aggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataat 172  Q
    |||||||||||||||||||||||||||| ||| || ||||||| ||||||  |||| |||||||||||||||| || ||||||||||||||||||| |||    
T  43896255 aggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaat 43896156  T
Q  173 gacttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctag 258  Q
    |||||   ||||||||||||||| ||||||  ||||| |||||| ||||||||||||||||||||||||| || ||||||||||||    
T  43896155 gactt---ctgccgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggattcattctag 43896073  T

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Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 78 - 264
Target Start/End: Complemental strand, 44306704 - 44306520
Alignment:
Q  78 gttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgactt 177  Q
    |||||||||||||||||||||||||||||| |  |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  44306704 gttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgactt 44306605  T
Q  178 ctgctgccgatgttcctgcttattcggtctcaaaagattgtggagaga-aattttcaaatggtgtgaattgattcattctagagaaat 264  Q
       |||||||||||||| ||||||| |||||| |||||| ||||||||   |||||||||||||||||| |||||||||||| |||||    
T  44306604 ---ctgccgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaat 44306520  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 43895705 - 43895568
Alignment:
Q  94 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgccgatgttcc 193  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | ||||||||||||||||||  |||||| |   ||| | || |||     
T  43895705 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtctgttagatattcaatgacct---ctgtcaatattct 43895609  T
Q  194 tgcttattcggtctcaaaagattgtggagagaaattttcaa 234  Q
    | ||| ||||||||||||||||| ||||| | |||||||||    
T  43895608 tacttgttcggtctcaaaagattctggagggcaattttcaa 43895568  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 44306129 - 44305992
Alignment:
Q  94 ctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttctgctgccgatgttcc 193  Q
    ||||| ||||||||  |||||||| |||| |   ||||||||||||||||||| | |||||||| |||||||||  |||||| |   ||| | || |||     
T  44306129 ctggacaaattgttgctgtgtttggtgctgagtgtgaatctggagatacttttgctgatgggtccgttagatattcaatgacct---ctgtcaatattct 44306033  T
Q  194 tgcttattcggtctcaaaagattgtggagagaaattttcaa 234  Q
    | ||| ||||||||||||||||| ||||| | |||||||||    
T  44306032 tacttgttcggtctcaaaagattctggagggcaattttcaa 44305992  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 44312172 - 44312137
Alignment:
Q  353 tgtgttctgcatttaacacttgatcctatctctgct 388  Q
    |||||||||||||||||| |||||||||||||||||    
T  44312172 tgtgttctgcatttaacagttgatcctatctctgct 44312137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 43895890 - 43895856
Alignment:
Q  353 tgtgttctgcatttaacacttgatcctatctctgc 387  Q
    ||||||||||||||||||| |||||||||||||||    
T  43895890 tgtgttctgcatttaacacctgatcctatctctgc 43895856  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 385
Target Start/End: Complemental strand, 44306313 - 44306284
Alignment:
Q  356 gttctgcatttaacacttgatcctatctct 385  Q
    ||||||||||||||||||||||||||||||    
T  44306313 gttctgcatttaacacttgatcctatctct 44306284  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 250
Target Start/End: Original strand, 35856845 - 35857017
Alignment:
Q  75 gaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatga 174  Q
    |||||| |||| |||||||||||| |||||||| |||| | ||||| | ||  || | | ||||| || ||||| ||||||||||||||||     ||||    
T  35856845 gaagttaatgaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgttagatgggctatga 35856944  T
Q  175 cttctgctgccgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgatt 250  Q
    |||||||   | |||||| || |||||||||||||||||||| | | ||| ||| |||||||| ||||||| ||||    
T  35856945 cttctgc---caatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatgttgtgaatggatt 35857017  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
Q  135 ggagatacttttaccgatgggtctgttagatatataatgacttc 178  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||    
T  15040348 ggagatacttttactgatgggtctgttaaatatacaatgacttc 15040305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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