View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_2 (Length: 891)
Name: NF3001_low_2
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 20 - 876
Target Start/End: Complemental strand, 18930867 - 18930026
Alignment:
| Q |
20 |
cctcttggaagagtgatttctggttgtcttgaaaattttggaatcattgatagtcttcaaagatccaaagacttcagtatcgaacaagccttaaaaccct |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930867 |
cctcttggaagagtgatttctggttgtcttgaaaattttggaatcattgatagtcttcaaagatccaaagacttcagtatcgaacaagccttaaaaccct |
18930768 |
T |
|
| Q |
120 |
cttttgggccactttttaaccaaataactctggcaaggttgaaagttcgttcgcgtgatgttgttgaaaaactttttaaagatggtgaagta---aaaca |
216 |
Q |
| |
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|||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||| ||||| | |||| ||||||| | ||||| | |||| |
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| T |
18930767 |
cttttgggccacttttcaaccacataactctttcaaggttgaaagttcgttcacgtgatgtagttgagagacttcttaaagaagatgaagaagcaaaacg |
18930668 |
T |
|
| Q |
217 |
aagagaagcatctgccacgcaatcaaggaaaaatagagaggggaaaaagagggtcgcatctgattctactcggagagtgaccagaagaacaacaattgat |
316 |
Q |
| |
|
||||||||| || ||||| | |||||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
18930667 |
aagagaagcttcagccacaccgacaaggaaaaatagaaaggtgaaaaagagtgttgcatctgattcgactcggagagtgaccagaagaaaagaaattgat |
18930568 |
T |
|
| Q |
317 |
gaacttctgcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgtaaaattatagctgaagatt |
416 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18930567 |
gaacttcctcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgtaaaattatagccgaagatt |
18930468 |
T |
|
| Q |
417 |
ttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgaggacaacaaagatatagtaaaggagtatatgaagaagatgga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930467 |
ttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgaggacaacaaagatatagtaaaggagtatatgaagaagatgga |
18930368 |
T |
|
| Q |
517 |
agaagaaaaagcacaggaaactactgccatcactgctcctgagtcaaagaagagatcagcatctttaagtaatcaagtgccttccaagaaatctaaggta |
616 |
Q |
| |
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||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18930367 |
agaagaaaaagcata------------------tgcacctgagtcaaagaagagatcagtatctttaagtaatcaagtgccttccaagaaatctaaggta |
18930286 |
T |
|
| Q |
617 |
ttagacgatgatgcatcttcatttggtattcctaaggaacctcttcagtcttatcgtcgtgcaacttctagatcgtctgctgtagtcacaagggaagaaa |
716 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| | ||||||||||| | ||||||||||||||||||||||||| |
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| T |
18930285 |
ttagacgatgatgcatcttcatttagtattcctaaggaacctcttcagtttgatcgtcctacaacttctagaacttctgctgtagtcacaagggaagaaa |
18930186 |
T |
|
| Q |
717 |
ctctcgaaaattgttcaacggcgacaagagttgatagcttttatggatacatcaaatcagagacatgcggatacaactgatgttatcaagaaccttacca |
816 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18930185 |
ctctcaaaaattgttcaacggcgacaagagttgatagcttttatggatacatcaaatcagagacatgcggatacaactgattttatcaagaaccttacca |
18930086 |
T |
|
| Q |
817 |
gtttggtccggaagatcttagagaaaccttaggattattttttaattgtatgctgttttt |
876 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18930085 |
gtttggtccagaagatcttagagaaaccttaggattattttttaattgtatgctgttttt |
18930026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 23 - 629
Target Start/End: Complemental strand, 36845172 - 36844566
Alignment:
| Q |
23 |
cttggaagagtgatttctggttgtcttgaaaattttggaatcattgatagtcttcaaagatccaaagacttcagtatcgaacaagccttaaaaccctctt |
122 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
36845172 |
cttggaagagtgatttctggttgtcttgaaacttttggaatcattgatagtcttcaaagatccaaagacttcagtatcgtacaagctttaaaaccctctt |
36845073 |
T |
|
| Q |
123 |
ttgggccactttttaaccaaataactctggcaaggttgaaagttcgttcgcgtgatgttgttgaaaaactttttaaagatggtgaagtaaaacaaagaga |
222 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||| |||| ||||||||||| |||||| |
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| T |
36845072 |
ttggtccactttttaaccaaataactttggcaaggttgaaagttcgttcacgtgatgttgtggaaatacttaaagaagaaaatgaagtaaaacgaagaga |
36844973 |
T |
|
| Q |
223 |
agcatctgccacgcaatcaaggaaaaatagagaggggaaaaagagggtcgcatctgattctactcggagagtgaccagaagaacaacaattgatgaactt |
322 |
Q |
| |
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||| |||||||| | | ||| |||||||||| ||||||| ||||| || ||||||||||||||||||| |||||||||||||||| |||||| ||||||| |
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| T |
36844972 |
agcttctgccacaccaacaacgaaaaatagaaaggggaataagagtgttgcatctgattctactcggaaagtgaccagaagaacagcaattggtgaactt |
36844873 |
T |
|
| Q |
323 |
ctgcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtcatattggagtaccgtaaaattatagctgaagattttctca |
422 |
Q |
| |
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| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36844872 |
ccacctattggtacatcgcctctattgtctgtcatttttccagaagacagtgaggaagtcatattggagtaccgtaaaattatagctgaagattttctca |
36844773 |
T |
|
| Q |
423 |
gagctaatccaaattacatatttccaactgttcggtatgaagactatgacgaggacaacaaagatatagtaaaggagtatatgaagaagatggaagaaga |
522 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36844772 |
gagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgaggacaacaaagatatagtaaaggagtatatgaagaagatggaagaaga |
36844673 |
T |
|
| Q |
523 |
aaaagcacaggaaactactgccatcactgctcctgagtcaaagaagagatcagcatctttaagtaatcaagtgccttccaagaaatctaaggtattagac |
622 |
Q |
| |
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|| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36844672 |
aatagcacaggaagctagtgctatcactgctcctgagtcaaagaagagatcagcacctttaagtaatcaagtgccttccaagaaatctaaggtattagat |
36844573 |
T |
|
| Q |
623 |
gatgatg |
629 |
Q |
| |
|
||||||| |
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|
| T |
36844572 |
gatgatg |
36844566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 628 - 866
Target Start/End: Complemental strand, 36844540 - 36844311
Alignment:
| Q |
628 |
tgcatcttcatttggtattcctaaggaacctcttcagtcttatcgtcgtgcaacttctagatcgtctgctgtagtcacaagggaagaaactctcgaaaat |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
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|
| T |
36844540 |
tgcatcttcatttggtattcctaaggaacctattcagtttgatcgtcccgcaacttctagatcttctgttgtagtcacaagggaagaaactctcaaaaat |
36844441 |
T |
|
| Q |
728 |
tgttcaacggcgacaagagttgatagcttttatggatacatcaaatcagagacatgcggatacaactgatgttatcaagaaccttaccagtttggtccgg |
827 |
Q |
| |
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|||||||| || ||||||| |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
36844440 |
tgttcaactgcaacaagag---------tttatggaaacatcaaatcggagacatgtggatacaactgatgttatcaagaaccttactagtttcatccag |
36844350 |
T |
|
| Q |
828 |
aagatcttagagaaaccttaggattattttttaattgta |
866 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36844349 |
aagatcttagacaaaccttaggattattttttaattgta |
36844311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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