View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_21 (Length: 380)
Name: NF3001_low_21
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 41 - 364
Target Start/End: Complemental strand, 11610986 - 11610662
Alignment:
| Q |
41 |
aactttgtctatcaattaaaaaatttattaacacattttatctccctttcaaatctccctataatggaggggatttaacattaattaagagacttttgta |
140 |
Q |
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| T |
11610986 |
aactttgtctatcaattaaaaaatttattaacacattttatctccctttcaaatctccctataatggaggggatttaacattaattaagacacttttgta |
11610887 |
T |
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| Q |
141 |
tctcatcccttgcnnnnnnnn-ttgaactaaacaattaaaatttaaaataattcattttctgtcatctgctctatttcactccaaccaaacaccatcaaa |
239 |
Q |
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| T |
11610886 |
tctcatcccttgcaaaaaaaaattgaactaaacaattaaaatttaaaataatccattttctgtcatctgctctatttcactccaaccaaacaccatcaaa |
11610787 |
T |
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| Q |
240 |
aagaacagtcaaaataaacttgataagtgacttatctaaaaaattggattttgggaaaacaacaaaatcctttaattccacatagcaaaagaaaaggaca |
339 |
Q |
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| T |
11610786 |
aagaacagtcaaaataaacttgataagtgacttatctaaaaaattggattttggggaaacaacaaaatcctttaattccacatagcaaaagaaaaagaca |
11610687 |
T |
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| Q |
340 |
gaatgtgaaccaagggggaactcat |
364 |
Q |
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| T |
11610686 |
gaatgtgaaccaagggggaactcat |
11610662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 11609292 - 11609202
Alignment:
| Q |
219 |
ctccaaccaaacaccatcaaaaagaacagtcaaaataaacttgataagtgacttatctaa-aaaattggattttgggaaaacaacaaaatc |
308 |
Q |
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| T |
11609292 |
ctccaaccaaacacaatgtagaagaacattgaaagtaaccttgataagtgacttatctaaaaaaaattgattttgaggaaacaacaaaatc |
11609202 |
T |
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