View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_low_22 (Length: 346)

Name: NF3001_low_22
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_low_22
NF3001_low_22
[»] chr6 (10 HSPs)
chr6 (6-346)||(32275496-32275827)
chr6 (36-261)||(31522327-31522550)
chr6 (6-167)||(4321483-4321635)
chr6 (78-189)||(13543678-13543788)
chr6 (290-346)||(31522535-31522591)
chr6 (277-331)||(4321725-4321779)
chr6 (86-180)||(8518521-8518615)
chr6 (287-333)||(32274219-32274265)
chr6 (287-333)||(14153389-14153435)
chr6 (287-333)||(17436538-17436584)
[»] chr4 (25 HSPs)
chr4 (13-274)||(24972529-24972787)
chr4 (43-332)||(23283250-23283529)
chr4 (36-274)||(36499045-36499281)
chr4 (35-330)||(45246734-45247021)
chr4 (6-274)||(12586324-12586583)
chr4 (36-274)||(55523864-55524100)
chr4 (65-189)||(22182152-22182276)
chr4 (52-189)||(50008795-50008932)
chr4 (78-189)||(43210016-43210125)
chr4 (98-189)||(156890-156981)
chr4 (78-189)||(33990766-33990877)
chr4 (52-189)||(50336190-50336327)
chr4 (78-189)||(1938584-1938695)
chr4 (78-189)||(41418915-41419026)
chr4 (78-189)||(12656519-12656637)
chr4 (82-180)||(6599370-6599469)
chr4 (287-333)||(24974143-24974189)
chr4 (291-346)||(34235705-34235760)
chr4 (277-316)||(46817419-46817458)
chr4 (277-306)||(12586324-12586353)
chr4 (277-346)||(33164492-33164561)
chr4 (277-306)||(36499045-36499074)
chr4 (288-333)||(36501863-36501908)
chr4 (277-306)||(55523864-55523893)
chr4 (287-332)||(55527910-55527955)
[»] chr1 (17 HSPs)
chr1 (6-277)||(33402818-33403087)
chr1 (6-274)||(35577198-35577463)
chr1 (10-261)||(48025690-48025938)
chr1 (54-240)||(25817571-25817755)
chr1 (33-189)||(3368241-3368397)
chr1 (78-189)||(16315151-16315262)
chr1 (52-189)||(23941639-23941776)
chr1 (83-189)||(12063564-12063670)
chr1 (89-189)||(30704342-30704442)
chr1 (36-129)||(18426347-18426440)
chr1 (277-346)||(28475969-28476038)
chr1 (287-333)||(28446527-28446573)
chr1 (287-333)||(35563540-35563586)
chr1 (287-331)||(33617681-33617725)
chr1 (287-333)||(35563395-35563441)
chr1 (277-306)||(35577434-35577463)
chr1 (287-331)||(33401445-33401489)
[»] chr8 (13 HSPs)
chr8 (6-274)||(34276331-34276596)
chr8 (82-189)||(24626061-24626168)
chr8 (33-189)||(2807136-2807291)
chr8 (64-164)||(32075054-32075154)
chr8 (78-183)||(13868202-13868307)
chr8 (33-152)||(27188157-27188276)
chr8 (82-189)||(14189784-14189893)
chr8 (154-241)||(33228289-33228374)
chr8 (64-136)||(20532101-20532173)
chr8 (122-189)||(41601124-41601191)
chr8 (139-189)||(20534367-20534417)
chr8 (287-333)||(5967234-5967280)
chr8 (83-122)||(22661933-22661972)
[»] chr3 (21 HSPs)
chr3 (6-274)||(34086511-34086779)
chr3 (6-274)||(7666641-7666906)
chr3 (8-274)||(19866872-19867136)
chr3 (6-330)||(35063005-35063320)
chr3 (16-174)||(39649667-39649825)
chr3 (40-240)||(35995259-35995457)
chr3 (78-189)||(54335658-54335769)
chr3 (83-188)||(11916935-11917040)
chr3 (52-189)||(30933793-30933930)
chr3 (70-189)||(14443736-14443855)
chr3 (52-189)||(20518047-20518184)
chr3 (78-189)||(30528501-30528612)
chr3 (78-189)||(53767228-53767339)
chr3 (204-258)||(15041875-15041929)
chr3 (277-331)||(39649869-39649923)
chr3 (277-346)||(6162669-6162738)
chr3 (291-333)||(15040716-15040758)
chr3 (277-306)||(19866872-19866901)
chr3 (277-306)||(34086750-34086779)
chr3 (287-331)||(7665770-7665814)
chr3 (277-333)||(53827648-53827704)
[»] scaffold1063 (1 HSPs)
scaffold1063 (6-330)||(1513-1830)
[»] chr5 (17 HSPs)
chr5 (6-274)||(30491467-30491734)
chr5 (16-261)||(763067-763309)
chr5 (10-274)||(5504856-5505112)
chr5 (36-331)||(34017381-34017660)
chr5 (56-316)||(38739439-38739690)
chr5 (98-276)||(33143948-33144125)
chr5 (52-189)||(32910589-32910726)
chr5 (78-189)||(29195851-29195962)
chr5 (78-189)||(20887691-20887802)
chr5 (108-189)||(16109323-16109403)
chr5 (78-179)||(15235063-15235165)
chr5 (107-183)||(8736462-8736538)
chr5 (111-189)||(35050308-35050386)
chr5 (287-332)||(6706032-6706077)
chr5 (286-330)||(28677924-28677968)
chr5 (277-306)||(30491705-30491734)
chr5 (290-330)||(33144184-33144224)
[»] chr2 (10 HSPs)
chr2 (6-262)||(8277135-8277389)
chr2 (36-274)||(11573772-11574015)
chr2 (35-235)||(31133288-31133486)
chr2 (64-189)||(20927515-20927640)
chr2 (65-189)||(22787786-22787910)
chr2 (78-189)||(9829368-9829479)
chr2 (64-189)||(35000448-35000573)
chr2 (290-333)||(8273280-8273323)
chr2 (277-316)||(31133231-31133270)
chr2 (296-346)||(8277394-8277444)
[»] scaffold0037 (1 HSPs)
scaffold0037 (6-240)||(38062-38292)
[»] chr7 (13 HSPs)
chr7 (52-189)||(2369656-2369793)
chr7 (53-189)||(44222013-44222149)
chr7 (70-189)||(4452398-4452517)
chr7 (52-189)||(23941347-23941484)
chr7 (52-189)||(11356343-11356480)
chr7 (78-189)||(4278606-4278718)
chr7 (107-189)||(4452757-4452839)
chr7 (80-183)||(31730919-31731021)
chr7 (123-189)||(13070509-13070575)
chr7 (287-333)||(5169-5215)
chr7 (82-180)||(12868627-12868725)
chr7 (158-240)||(10526860-10526940)
chr7 (287-332)||(38386210-38386255)
[»] scaffold0599 (1 HSPs)
scaffold0599 (83-188)||(8686-8791)
[»] scaffold1050 (1 HSPs)
scaffold1050 (91-189)||(2065-2163)
[»] scaffold0041 (1 HSPs)
scaffold0041 (228-274)||(24258-24304)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 346
Target Start/End: Original strand, 32275496 - 32275827
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||    
T  32275496 actgaaat-aaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacattacatgttctttgatgcttgatgagcgtagaaatttg 32275594  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||    
T  32275595 tttcctgacgatttgcaaagatttggaatgaagatttttacccaaaatttcgcacttttggggtttttggaggtggaggaaaag--aaaaaatggagctt 32275692  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcg 305  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |||      |||||| |||||||||||||||||||||     
T  32275693 tgtggttgcctgctggattttgaacgaaaatagtacttaacacaagttaacatgcgctacgtgac------ttaagtaacgtagcgcatgttaacttgca 32275786  T
Q  306 taggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    |||||||||||| ||| ||||||||||| ||| ||||||||    
T  32275787 taggggcatttcagtcatttactttgggaatgagcggaacc 32275827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 31522327 - 31522550
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatg 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||     
T  31522327 accagcaaaaatgaaagagttttgacggtacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaatt 31522426  T
Q  136 atgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaa 235  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| ||||||||| |||||| |||| ||||||||    
T  31522427 aagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag--aaaaaatggagctatgtggttgcttgctgggttttgaacgaaaa 31522524  T
Q  236 tagtatttaacgcaagttaacatgcg 261  Q
    ||||| ||||||||||||||| ||||    
T  31522525 tagtacttaacgcaagttaacttgcg 31522550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 4321483 - 4321635
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |||||||     
T  4321483 actgaaatgaaaa-cgatactaccagcaaaaccagcaaaaatgaaagagttttgatggtacattacctgttctttgatgattgatgagcgtagaaacttt 4321581  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggg 167  Q
    |  ||  |        ||||||||||||||| |||||||||||||||||| |||||||||||    
T  4321582 tacccaaa--------aatgatttggaatgaagatttttacccaaaattttgcacttttggg 4321635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 13543678 - 13543788
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    ||||||||||||||||||| ||| |||| |||||  ||||||||||||||||||||| | |||||| ||| |||| || |||| ||| ||||||||||||    
T  13543678 tttgatgcttgatgagcgtagaagcttgcttcctaccgatttgcaatgatttggaataaagattttgaccaaaaaatt-gcaccttttgggtttttggag 13543776  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  13543777 gtggagggaaag 13543788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 31522535 - 31522591
Alignment:
Q  290 cgcatgttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  31522535 cgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaacc 31522591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 4321725 - 4321779
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    |||||||||||| ||||||||||||||||||| ||||||| | || |||||||||    
T  4321725 ttaagtcacgtaacgcatgttaacttgcgtagaggcattttgatcatttactttg 4321779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 8518615 - 8518521
Alignment:
Q  86 ttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtg 180  Q
    ||||||| ||| |||||||| ||||  ||||||  |||||||||| |||||||||||| ||  |||| || |||||||| |||||||| ||||||    
T  8518615 ttgatgaacgtagaaacttgcttcccaacgattaacaatgatttgaaatgatgattttgacataaaaatttgcactttttgggtttttagaggtg 8518521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 32274265 - 32274219
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||    
T  32274265 tagcgcatgttaacatgcgtaggggcatttcgatcatttactttggg 32274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 14153435 - 14153389
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||||||||| |||| |||| |||||||||||    
T  14153435 tagcgcatgttaacatgcgtaggggtattttggtcatttactttggg 14153389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 17436538 - 17436584
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| || |||||| |||||||||| |||||||||||    
T  17436538 tagcgcatgttaacatgtgtagggacatttcggtcatttactttggg 17436584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 24972787 - 24972529
Alignment:
Q  13 tgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctg 112  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  24972787 tgaaaaacaaaactaccagcaaaaccagcaaaaatgaaaaagttttgacggtacattacctgttatttgatgcttgatgagcgtagaaacttgtttcctg 24972688  T
Q  113 acgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggtt 212  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  24972687 acgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag---aaaaatggagctttgtggtt 24972591  T
Q  213 gcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    | ||||| | |||| ||||||||||||| | ||||||||||||||||||| |||||||||||    
T  24972590 gtctgctaggttttgaacgaaaatagtactcaacgcaagttaacatgcgctacgggacttaa 24972529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 43 - 332
Target Start/End: Complemental strand, 23283529 - 23283250
Alignment:
Q  43 aaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgattt 142  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||    
T  23283529 aaaatgaaaaggttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttagaatgaagattt 23283430  T
Q  143 ttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagtatt 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||        ||||||||| ||||||| | ||||||||| ||||||||||||| |    
T  23283429 ttacccaaaattttgcacttttggggtttttggaggtggagggaaag--aaaaaatggagctttatggttgcatactggattttgaacgaaaatagtact 23283332  T
Q  243 taacgcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttgg 332  Q
    |||||||||||||||||||| ||| |||        |||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  23283331 taacgcaagttaacatgcgctacgtgac--------aagtcacgtagcgcatgttaacttgcataggggcatttcggtcatttactttgg 23283250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 36499281 - 36499045
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatg 135  Q
    |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  36499281 accagcaaaaatgaaaaagttttgacggtaaattacctgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatg 36499182  T
Q  136 atgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaa 235  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| | |||| ||||||||    
T  36499181 aagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag--aaaaaatggagctttgtggttgcctgcttggttttgaacgaaaa 36499084  T
Q  236 tagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||| ||||||||||||||||||||| ||| |||||||    
T  36499083 tagtacttaacgcaagttaacatgcgctacgtgacttaa 36499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 35 - 330
Target Start/End: Original strand, 45246734 - 45247021
Alignment:
Q  35 aaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaat 134  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45246734 aaccagcaaaaacgaatgagttttgacggtacattacctgttctttgatgcttgatgagcgtggaaacttgtttcttgacgatttgcaatgatttggaat 45246833  T
Q  135 gatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaa 234  Q
    || ||||||||||||||||||| ||||||| | ||||||||||||||||||||||        | ||||||||||||||||||||||||||| |||||||    
T  45246834 gaagatttttacccaaaatttcacacttttagagtttttggaggtggagggaaag--gaaaagtcgagctttgtggttgcctgctggattttgaacgaaa 45246931  T
Q  235 atagtatttaacgcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttacttt 330  Q
    ||||||||||| ||||||||| |||||| ||| |||      |||||||| ||||||||||||||| | ||||||| ||||| | || ||||||||    
T  45246932 atagtatttaaagcaagttaatatgcgctacgtgac------ttaagtcatgtagcgcatgttaacatacgtagggacattttgatcatttacttt 45247021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 12586583 - 12586324
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||| ||||||| |||||||       ||||| |||||||     
T  12586583 actgaaatgaaaaacgaaactaccagcaaaactaacaaaaatgaaaaagttttgacggtacattacctgttgtttgatg-------agcgtagaaactta 12586491  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||| ||    
T  12586490 tttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcacttttggggtttttggaggtggagggaaag--aaaaaatggagttt 12586393  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    | ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  12586392 tatggttgcatgctgggttttgaacgaaaatagtacttaacgcaagttaacatgcgctacgtgacttaa 12586324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 55524100 - 55523864
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatg 135  Q
    |||||||||||||||| ||||||||  || ||| || | |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  55524100 accagcaaaaatgaaaaagttttgaacgttcattacatattctttgatgcttgatgagcgtagaaacttgtttcctgacgatttacaatgatttggaatg 55524001  T
Q  136 atgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaa 235  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||| |||| |||| ||||||||    
T  55524000 aagatttttacccaaaatttcgcacttttggggtttttgcaggtggagggaaag--aaaaaatggagctttgtggttgcctactgggttttgaacgaaaa 55523903  T
Q  236 tagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||| ||||||||||||||||||||| ||| |||||||    
T  55523902 tagtacttaacgcaagttaacatgcgctacgtgacttaa 55523864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 22182152 - 22182276
Alignment:
Q  65 acatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcactttt 164  Q
    |||| ||||| | ||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||| ||| ||||  | ||||||||    
T  22182152 acattacctgatatttgatgcttgatgagcgtagaaacttgcttcttaacgatttgcaatgatttggaatgaagattttgacctaaaaaattgcactttt 22182251  T
Q  165 ggggtttttggaggtggagggaaag 189  Q
     ||||||||||||||||||||||||    
T  22182252 tgggtttttggaggtggagggaaag 22182276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 50008795 - 50008932
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |||||||    
T  50008795 gagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaa 50008894  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |  ||||||||||  |||||||| |||| |||||||||    
T  50008895 aaatcgcacttttttggtttttgaaggtcgagggaaag 50008932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 43210016 - 43210125
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||  ||||||||||  |||||||| ||    
T  43210016 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttt--ggtttttgaag 43210113  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  43210114 gtggagggaaag 43210125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 156890 - 156981
Alignment:
Q  98 gaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||| ||||||||| ||||||||||||||    
T  156890 gaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagggaaag 156981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 33990877 - 33990766
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||||||||||| |||| |||||| ||||||||  |||||||||| ||||||||| ||    
T  33990877 tttggtgcttgatgagcgtagaaacttgattcatgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaag 33990778  T
Q  178 gtggagggaaag 189  Q
    ||||| ||||||    
T  33990777 gtggaaggaaag 33990766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 50336190 - 50336327
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||||| | |||||||| ||| ||||||||||||||| ||||| |||| |||||| |||||||    
T  50336190 gagttttgatgatacaatacctgatatttggtgcttgatgagcatagaaacttgcttcatgacgatttgcaatggtttgggatgaggattttgacccaaa 50336289  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |  |||||||||| ||||||||| ||||||||||||||    
T  50336290 aaatcgcactttttgggtttttgaaggtggagggaaag 50336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 1938695 - 1938584
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||| | |||||||  || |||||||||||||||||||||| |||| |||||| ||||||||  |||||||||| ||||||||| ||    
T  1938695 tttggtgcttgatgagcatagaaactttctttctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaag 1938596  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  1938595 gtggagggaaag 1938584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 41419026 - 41418915
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| ||||||||  |||| |||||||| |||||||||| |||| |||||| ||||||||  |||||||||| ||||||||| ||    
T  41419026 tttggtgcttgatgagcgtagaaacttgcgtcctaacgatttgtaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaag 41418927  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  41418926 gtggagggaaag 41418915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 12656637 - 12656519
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa-------atttcgcacttttggggtt 170  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||||||||| || | |||||| |||||||       | ||||||||||| |||||    
T  12656637 tttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggataaggattttgacccaaaaaatcgcacttcgcactttttgggtt 12656538  T
Q  171 tttggaggtggagggaaag 189  Q
    |||| ||||||||||||||    
T  12656537 tttgaaggtggagggaaag 12656519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 6599370 - 6599469
Alignment:
Q  82 atgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcactttt-ggggtttttggaggtg 180  Q
    ||||||||| ||| | ||||| || |||||||||| ||||||||||||| ||||| |||||||||| |||| |||||| |||| ||||||||||||||||    
T  6599370 atgcttgataagcatagaaacctgcttcctgacgacttgcaatgatttgaaatgaagatttttaccaaaaaattcgcatttttgggggtttttggaggtg 6599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 24974143 - 24974189
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  24974143 tagcgcatgttaacatgcgtaggggcatttcggtcatttactttggg 24974189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 34235705 - 34235760
Alignment:
Q  291 gcatgttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    |||||||||| |||||| ||||||||||||| |||||||| || ||| ||||||||    
T  34235705 gcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaacc 34235760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 46817419 - 46817458
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcattt 316  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  46817419 ttaagtcacgcagcgcatgttaacatgcgtaggggcattt 46817458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 12586324 - 12586353
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  12586324 ttaagtcacgtagcgcatgttaacttgcgt 12586353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 33164492 - 33164561
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    ||||||||||   ||||||||||| ||||||||||||||| || | ||||||||| | ||| ||||||||    
T  33164492 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaacc 33164561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 36499045 - 36499074
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  36499045 ttaagtcacgtagcgcatgttaacttgcgt 36499074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 36501863 - 36501908
Alignment:
Q  288 agcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    ||||||||| ||| ||||||||||||||||| || |||||||||||    
T  36501863 agcgcatgtcaacatgcgtaggggcatttcgatcatttactttggg 36501908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 55523864 - 55523893
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  55523864 ttaagtcacgtagcgcatgttaacttgcgt 55523893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 55527910 - 55527955
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttgg 332  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||||    
T  55527910 tagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttgg 55527955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 33402818 - 33403087
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  33402818 actgaaatgaaaaacgaaactaccagcaaaaccagcaaaaatgaaaaagttttgacggtacattacctgttctttgatgcttaatgagcgtagaaacttg 33402917  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||        ||||| ||    
T  33402918 tttccggaagatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttagaggtggagcgaaag--aaaaaatggagttt 33403015  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaagtt 277  Q
    | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  33403016 tatggttgcctgctggattttgaacgaaaatagtacttaacgcaagttaacatgcgctgcgtgacttaagtt 33403087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 35577198 - 35577463
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  35577198 actgaaatgaaaaacgaaactatcagcaaaaccagcaaaaatgaaaaagttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttg 35577297  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    |||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| | ||||         ||||||     
T  35577298 tttcctaacgatttgcaatgatttggaatgagtatttttaccaaaaatttcgcacttttggggtttttggaggtggacgaaaagaaaaaa---ggagctc 35577394  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  35577395 tgtggttgcctgctgggttttgaacgaaaatagtacttaacgcaagttaacatgcgctacgtgacttaa 35577463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 48025938 - 48025690
Alignment:
Q  10 aaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttc 109  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||    
T  48025938 aaatgaaaaacgaaactactagcaaaaccaacaaaaatgaaaaagttttgacagtacattacctgttctttgatgcttgatgagcatagaaacttgtttc 48025839  T
Q  110 ctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtg 209  Q
     ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||    
T  48025838 ttgatgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttgggg-ttttggaggtggagggaaag--aaaaaatggagctttgtg 48025742  T
Q  210 gttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcg 261  Q
    |||| ||| | | |||| ||| ||||||||| ||||||||||||||||||||    
T  48025741 gttgtctgataggttttgaacaaaaatagtacttaacgcaagttaacatgcg 48025690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 25817755 - 25817571
Alignment:
Q  54 gttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaat 153  Q
    ||||||||||||||| ||||||||| |||||||||| |||||  |||||||| ||  ||||||||||||||||||||||| || |||||| ||||||||     
T  25817755 gttttgacggtacattacctgttctatgatgcttgacgagcgcagaaacttgctttatgacgatttgcaatgatttggaacgaagattttgacccaaaaa 25817656  T
Q  154 ttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagta 240  Q
    ||| ||||||| ||||||||||||||||||||||||        ||||||| |||||||| ||||||| |||| | |||||||||||    
T  25817655 ttcacactttttgggtttttggaggtggagggaaag--aaaaaatggagctgtgtggttgtctgctgggttttgatcgaaaatagta 25817571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 3368397 - 3368241
Alignment:
Q  33 aaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttgga 132  Q
    ||||| |||||||| ||| ||||||||| | ||||| || || | ||||||||||||| || || |||||||| ||||||| ||||||||||||||  ||    
T  3368397 aaaactagcaaaaacgaatgagttttgatgatacattacttgatgtttgatgcttgataagtgtagaaacttgcttcctgatgatttgcaatgattatga 3368298  T
Q  133 atgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||| |||||| |||||||   |||||||||| ||||||||||||||||||||||||    
T  3368297 atgaagattttgacccaaataatcgcactttttgggtttttggaggtggagggaaag 3368241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 16315151 - 16315262
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| | ||||||  |||||||||| |||||| || ||    
T  16315151 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaagattttgatccaaaaaatcgcactttttgggtttgtgaag 16315250  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  16315251 gtggagggaaag 16315262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 23941776 - 23941639
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||| ||| |||||||| ||||||||||||||||||||||||| |||| | |||| |||||||    
T  23941776 gagttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgacgatttgcaatgatttgggatgagggttttgacccaaa 23941677  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |  | |||||||| ||||||||| ||||||||||||||    
T  23941676 aaattgcactttttgggtttttgaaggtggagggaaag 23941639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 12063670 - 12063564
Alignment:
Q  83 tgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtgga 182  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||  || ||||||| ||||||||| |||  ||    
T  12063670 tgcttgatgagtgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcacactttttgggtttttgaaggaaga 12063571  T
Q  183 gggaaag 189  Q
    |||||||    
T  12063570 gggaaag 12063564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 30704342 - 30704442
Alignment:
Q  89 atgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaa 188  Q
    ||||| || |||||||| ||||||||||||||||||||||||  ||||  ||||| ||||||||  |||||||||| ||||||||| |||||||||||||    
T  30704342 atgagtgtagaaacttgcttcctgacgatttgcaatgatttgagatgagaattttgacccaaaaagtcgcactttttgggtttttgaaggtggagggaaa 30704441  T
Q  189 g 189  Q
    |    
T  30704442 g 30704442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 18426347 - 18426440
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgattt 129  Q
    ||||||||||   ||||||||| || | ||||| | ||| | ||||| | ||||||||||| |||||||| |||||||||||||||||||||||    
T  18426347 accagcaaaatgaaaagagtttagatgatacattatctgatttttgacgtttgatgagcgtagaaacttgcttcctgacgatttgcaatgattt 18426440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 28475969 - 28476038
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    ||||||||| |||||||||||||| || |||||||||||||| || ||||||||| | ||| ||||||||    
T  28475969 ttaagtcacatagcgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaacc 28476038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 28446527 - 28446573
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||    
T  28446527 tagcgcatgttaacatgcgtaggggcatttcagtcatttactttggg 28446573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 35563586 - 35563540
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||    
T  35563586 tagcgcatgttaacatgcgtaggggcatttcagtcatttactttggg 35563540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 33617725 - 33617681
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||    
T  33617725 tagcgcatgttaacatgcataggggcatttcggtcatttactttg 33617681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 35563441 - 35563395
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||| ||||||||||| ||| |||||||||||    
T  35563441 tagcgcatgttaacatgcgcaggggcatttcagtcatttactttggg 35563395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 35577463 - 35577434
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  35577463 ttaagtcacgtagcgcatgttaacttgcgt 35577434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 33401489 - 33401445
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    |||||||||||||| ||| || ||||||||||||| |||||||||    
T  33401489 tagcgcatgttaacatgcataagggcatttcggtcatttactttg 33401445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 34276596 - 34276331
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  34276596 actgaaatgaaaaacgaaactaccagcaaaactagcaaaaatgaaaaagttttgacggtacatcacctgttctttgatggttgatgggcgtagaaacttg 34276497  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||         | ||||||    
T  34276496 tttcatgacgatttgcaatgatttggaatgaagatttttacccaaaatttctctcttttggggtttttggaggtggaggggaa---aaaaaattgagctt 34276400  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||| ||| ||| |||||||    
T  34276399 tgtggttgcctgctgggttttgaacgaaaatagtacttaacgcaagttaacatccgctacgtgacttaa 34276331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 24626061 - 24626168
Alignment:
Q  82 atgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtgg 181  Q
    ||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||  | |||||||| | |||||||||||||     
T  24626061 atgcttgatgagcgtagaaacttgcttcatgatgatttgcaatgatttggaatgaagatttttacccaaaaaattgcactttttgtgtttttggaggtgc 24626160  T
Q  182 agggaaag 189  Q
    ||||||||    
T  24626161 agggaaag 24626168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 2807136 - 2807291
Alignment:
Q  33 aaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttgga 132  Q
    ||||| |||||||| | | ||||||||| | ||||| ||||||||||||||| |||| ||||||   |||||| ||||| |||||||||||||||||  |    
T  2807136 aaaactagcaaaaacggatgagttttgatgatacattacctgttctttgatgtttgacgagcgtaagaacttgcttcctaacgatttgcaatgatttcaa 2807235  T
Q  133 atgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||| |||||| ||||||||  | | |||||| ||| |||| |||||||||||||||    
T  2807236 atgaagattttgacccaaaaaattgtactttttggg-ttttagaggtggagggaaag 2807291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 32075154 - 32075054
Alignment:
Q  64 tacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttt 163  Q
    ||||| ||||| | ||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||| |||| |||||| |||||||| ||| ||||||    
T  32075154 tacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgatgatttacaatgatttgggatgaggattttgacccaaaaattcacacttt 32075055  T
Q  164 t 164  Q
    |    
T  32075054 t 32075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 13868202 - 13868307
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||||||||||||||| || |||||||  ||||  |||||||||||||||||| ||||| || ||| |||||||| || |||||||| | ||||||||||    
T  13868202 tttgatgcttgatgagtgtagaaacttacttccccacgatttgcaatgatttgaaatgaagaatttgacccaaaaatttgcactttttgagtttttggag 13868301  T
Q  178 gtggag 183  Q
    ||||||    
T  13868302 gtggag 13868307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 27188157 - 27188276
Alignment:
Q  33 aaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttgga 132  Q
    ||||||||||||| | || |||||  || | ||||| ||||| | ||| ||| |||||| ||||||||| ||| |||||||||||| ||||||||||| |    
T  27188157 aaaaccagcaaaattaaatgagttaagatgatacattacctgattttttatgattgatgggcgtggaaatttgcttcctgacgattagcaatgatttgaa 27188256  T
Q  133 atgatgatttttacccaaaa 152  Q
    |||| |||||| ||||||||    
T  27188257 atgaagattttaacccaaaa 27188276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 14189893 - 14189784
Alignment:
Q  82 atgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggt-- 179  Q
    ||||||||||||||| | |||||  ||||| |||||||||||||||||| ||||| |||||| ||||||||  || ||||||| | | ||||||||||      
T  14189893 atgcttgatgagcgtagtaactttcttcctaacgatttgcaatgatttgaaatgaagattttgacccaaaaaatcacactttttgagattttggaggtag 14189794  T
Q  180 ggagggaaag 189  Q
    ||||||||||    
T  14189793 ggagggaaag 14189784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 33228374 - 33228289
Alignment:
Q  154 ttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagtat 241  Q
    ||||||||||| ||||||||||||||||||| ||||        |||||||||||||||||||||||| |||| ||||||||||||||    
T  33228374 ttcgcactttttgggtttttggaggtggaggaaaagaaaaaa--tggagctttgtggttgcctgctgggttttgaacgaaaatagtat 33228289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 20532101 - 20532173
Alignment:
Q  64 tacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatga 136  Q
    ||||| ||||| | ||||||||||||||||||| |||||||| ||||  || |||||||||||||||||||||    
T  20532101 tacattacctggtatttgatgcttgatgagcgtagaaacttgcttccatacaatttgcaatgatttggaatga 20532173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 41601191 - 41601124
Alignment:
Q  122 aatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||||||||| |||| |||||| ||||||||  |||||||||| ||||||||| ||||||||||||||    
T  41601191 aatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagggaaag 41601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 20534367 - 20534417
Alignment:
Q  139 atttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  20534367 attttgacccaaaatttcgcactttttgggtttttgaaggtggagggaaag 20534417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 5967234 - 5967280
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||    
T  5967234 tagcgcatgttaacatgcgtaggggcatttcgatcatttactttggg 5967280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 22661972 - 22661933
Alignment:
Q  83 tgcttgatgagcgtggaaacttgtttcctgacgatttgca 122  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  22661972 tgcttgatgagcgtagaaacttgcttcctgacgatttgca 22661933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 34086511 - 34086779
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtg--gaaact 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||| || ||||||  ||||||    
T  34086511 actgaaatgaaaaacgaaactaccagcaaaaccagcaaaaatgaaaaagttttgacggtacattatccgttctttgatgcttaataagcgtgtagaaact 34086610  T
Q  104 tgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagc 203  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  34086611 tatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag--aaaaaatggagc 34086708  T
Q  204 tttgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    |||||||||| ||| ||| |||| | ||||||||||| ||||||||||||||||||||| ||| |||||||    
T  34086709 tttgtggttgtctgttgggttttgagcgaaaatagtacttaacgcaagttaacatgcgctacgtgacttaa 34086779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 7666641 - 7666906
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||     
T  7666641 actgaaatgaaaaacgaaactaccagcaaaaccagcaaaaatgaaaaagttttgacggtacattacatgttctttgatgcttgatgagcgtagaaactta 7666740  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    |||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||| ||||||||||||||||||||||||        ||||||||    
T  7666741 tttcctgatgatttgcaatgatttggaatgaagattttacccaaaaatttcgcactttttgggtttttggaggtggagggaaag--aaaaaatggagctt 7666838  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
     ||||||||||||||| |||| ||| ||||||||| |||||||||| |||||||||| ||| |||||||    
T  7666839 agtggttgcctgctgggttttgaacaaaaatagtacttaacgcaag-taacatgcgctacgtgacttaa 7666906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 19867136 - 19866872
Alignment:
Q  8 tgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtt 107  Q
    ||||| ||||| ||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  19867136 tgaaacgaaaagcgaaactaccaacaaaaccagcaaaaatgaaaaagttttgacgatacattacctgttctttgatgcttgatgagcgtagaaacttgtt 19867037  T
Q  108 tcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttgg-ggtttttggaggtggagggaaagnnnnnnnntggagcttt 206  Q
    ||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||        |||||| ||    
T  19867036 tcctgacaatttacaatgatttggaatgaagattttcacccaaaatttcgcacttttggaggtttttggaggtggagggaaag--aaaaaatggagc-tt 19866940  T
Q  207 gtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||||||||||||| |||| || |||||||||| ||||||||||||||||||||| ||| |||||||    
T  19866939 gtggttgcctgctgggttttgaatgaaaatagtacttaacgcaagttaacatgcgctacgtgacttaa 19866872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 35063320 - 35063005
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||  ||||| |||| ||||||||| |||||||||||| ||||||||    
T  35063320 actgaaatgaaaaacgaaactatcagcaaaaccaacaaaaatgaaaaagttttgacaatacattacctattctttgatacttgatgagcgtagaaacttg 35063221  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    |||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||        | ||||||    
T  35063220 tttc-tgacgatttgcaatgatttggattaaagatttttacccaaaatttcgcacttttgggatttttggaggtggagggaaag--aaaaaatagagctt 35063124  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcg 305  Q
    |||||||||||||||| |||| |||||||||| || ||||||||||||||||||||| | |  |      ||||||| ||||| |||||||||||||||     
T  35063123 tgtggttgcctgctgggttttgaacgaaaataatacttaacgcaagttaacatgcgctatgtca------tttaagttacgtatcgcatgttaacttgca 35063030  T
Q  306 taggggcatttcggtcctttacttt 330  Q
    ||||   ||||||||| ||||||||    
T  35063029 taggaatatttcggtcatttacttt 35063005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 39649667 - 39649825
Alignment:
Q  16 aaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||| |||||||||||||    
T  39649667 aaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgatggtacattacctattctttgatgcttgatgagcgtagaaatttgtttcctgacg 39649766  T
Q  116 atttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttg 174  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  39649767 atttgcaatgatttggaatgaagatttttacccaaaattttgcacttttggagtttttg 39649825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 35995457 - 35995259
Alignment:
Q  40 gcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatga 139  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |  |    
T  35995457 gcaaaaatgaaaaagttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaaaa 35995358  T
Q  140 tttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagt 239  Q
     |||||||||||| ||| ||||||||||||||||||||||||||||||||        ||||||||| || ||||||||||| |||| ||||||||||||    
T  35995357 attttacccaaaaattcacacttttggggtttttggaggtggagggaaag--aaaaaatggagctttatgattgcctgctgggttttgaacgaaaatagt 35995260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 54335769 - 54335658
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| || |||||||| ||||||||| ||    
T  54335769 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaatttgcactttttgggtttttgaag 54335670  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  54335669 gtggagggaaag 54335658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 11917040 - 11916935
Alignment:
Q  83 tgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtgga 182  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||| |||| |||||| |||||||| ||||||||||| ||||||||| |||||||    
T  11917040 tgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtgga 11916941  T
Q  183 gggaaa 188  Q
    ||||||    
T  11916940 gggaaa 11916935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 30933793 - 30933930
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |||||||    
T  30933793 gagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaa 30933892  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |  | |||||||| ||||||||| ||||||||||||||    
T  30933893 aaattgcactttttgggtttttgaaggtggagggaaag 30933930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 14443736 - 14443855
Alignment:
Q  70 acctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggt 169  Q
    ||||| || ||| |||||||||||||| |||||||  ||||||||||||||||||||||||| |||| |||||| ||| ||||  |||||||||| ||||    
T  14443736 acctgatcattggtgcttgatgagcgtagaaacttacttcctgacgatttgcaatgatttgggatgaggattttgaccgaaaaaatcgcactttttgggt 14443835  T
Q  170 ttttggaggtggagggaaag 189  Q
    ||||||||||||||||||||    
T  14443836 ttttggaggtggagggaaag 14443855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 20518047 - 20518184
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||||||| |||||||| ||| ||||||||| ||||| ||||| |||| |||||| |||||||    
T  20518047 gagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttacaatgctttgggatgaggattttgacccaaa 20518146  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    | ||||||||||| ||||||||| ||||||||||||||    
T  20518147 aattcgcactttttgggtttttgaaggtggagggaaag 20518184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 30528612 - 30528501
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    ||||||| ||||||||  | |||||||| ||||||||||||||||||||||| |||||| |||||| | ||||||  |||||||||| ||||||||||||    
T  30528612 tttgatgtttgatgagtatagaaacttgcttcctgacgatttgcaatgatttagaatgaagattttgatccaaaaaatcgcactttttgggtttttggag 30528513  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  30528512 gtggagggaaag 30528501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 53767339 - 53767228
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||  ||||| ||||||||  |  ||||||| ||||||||| ||    
T  53767339 tttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgagaattttgacccaaaaaattacactttttgggtttttgaag 53767240  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  53767239 gtggagggaaag 53767228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 15041875 - 15041929
Alignment:
Q  204 tttgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacat 258  Q
    |||| ||||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  15041875 tttgcggttgcctgctgggttttgaacgaaaatagtacttaacgcaagttaacat 15041929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 39649869 - 39649923
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    ||||||||||||||||||||||||||||||| |  ||||||| || |||||||||    
T  39649869 ttaagtcacgtagcgcatgttaacttgcgtatgaacatttcgatcatttactttg 39649923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 6162669 - 6162738
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    ||||||||||   ||||||||||| ||||||||||||||| || | ||||||||||| ||| ||||||||    
T  6162669 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaacc 6162738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 15040758 - 15040716
Alignment:
Q  291 gcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||| |||||||||||||||| ||| |||||||||||    
T  15040758 gcatgttaacatgcgtaggggcatttcagtcatttactttggg 15040716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 19866872 - 19866901
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  19866872 ttaagtcacgtagcgcatgttaacttgcgt 19866901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 34086779 - 34086750
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  34086779 ttaagtcacgtagcgcatgttaacttgcgt 34086750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 7665814 - 7665770
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    |||||||||||||| ||| || ||||||||||||| |||||||||    
T  7665814 tagcgcatgttaacatgcataagggcatttcggtcatttactttg 7665770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 53827648 - 53827704
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    ||||||||||   ||||||||||| ||||||||||||||| || | |||||||||||    
T  53827648 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttggg 53827704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 1830 - 1513
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||    
T  1830 actgaaatgaaaaacgaaactaccagcaaaaccagcaaaaatgaaagagttttgacggtacattacatgttcttcgatgcttgatgagcgtagaaacttg 1731  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||        ||||||||    
T  1730 tttcctgacgatttgcaatgatttggaataaagatttttgcccaaaaattcgcacttttggggtttttggaggtggagggaaag-aaaaaaatggagctt 1632  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcg 305  Q
    | ||||||||||  ||||||| ||||||||| |||  ||||   ||||||||||||| ||  |||      |||| ||||||| ||||||||||| ||||    
T  1631 tatggttgcctggcggattttgaacgaaaattgtacctaacatgagttaacatgcgctacatgac------ttaactcacgtaacgcatgttaacatgcg 1538  T
Q  306 taggggcatttcggtcctttacttt 330  Q
     |||||||||| || | ||||||||    
T  1537 caggggcattttggacttttacttt 1513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 30491467 - 30491734
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    |||| |||||||||||| |||||||||||| |||||||||| |||| ||||||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  30491467 actgcaatgaaaaacgaaactaccagcaaacccagcaaaaaggaaaaagttttgattgtacattacctgttctttgatgcttgatgagcgtagaaacttg 30491566  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcactttt-ggggtttttggaggtggagggaaagnnnnnnnntggagct 204  Q
    | ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||        |||||||    
T  30491567 tctcctgacgatttgcaatgatttggaatgaagattttgactcaaaatttcgcacttttgggggtttttggaggtggagggaaag--aaaaaatggagct 30491664  T
Q  205 ttgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||| ||| |||||||    
T  30491665 ttgtggttgcctgctgggttttgaacgaaaatagtacttgacgcaagttaacatgcgctacgtgacttaa 30491734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 763067 - 763309
Alignment:
Q  16 aaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| ||||||||| |||    
T  763067 aaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacgctacattacctattctttgatgcttgatgagcgtagaaatttgtttcctaacg 763166  T
Q  116 atttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcc 215  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||| ||  ||||| ||||||||||||||        ||||||||||||||||||    
T  763167 atttgcaatgatttggaatgaagatttttatccaaaatttcgcactttt-ggaattttgaaggtggagggaaag--aaaaaatggagctttgtggttgcc 763263  T
Q  216 tgctggattttaaacgaaaatagtatttaacgcaagttaacatgcg 261  Q
    ||||||||||| |||||||||||||  | | |||||||||| ||||    
T  763264 tgctggattttgaacgaaaatagtacattatgcaagttaacttgcg 763309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 5505112 - 5504856
Alignment:
Q  10 aaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttc 109  Q
    ||||||||||||| ||||||| |||||||||||||||||||  |||||||| ||||||| |||||||||||||| |||||||||||| ||||| |||||     
T  5505112 aaatgaaaaacgaaactaccaacaaaaccagcaaaaatgaataagttttgatggtacattacctgttctttgattcttgatgagcgtagaaacctgtttt 5505013  T
Q  110 ctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtg 209  Q
    |||||||||||||||||||    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||         ||||||||||||    
T  5505012 ctgacgatttgcaatgatt----atgaagatttttacccaaaattttgcacttttggagtttttggaggtggagggaaa----aaaaatggagctttgtg 5504921  T
Q  210 gttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||  |||||| |||| |||||||||||||||||| ||| |||||||||||| ||| |||||||    
T  5504920 gttgtttgctgggttttgaacgaaaatagtatttaatgcatgttaacatgcgctacgtgacttaa 5504856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 36 - 331
Target Start/End: Original strand, 34017381 - 34017660
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatg 135  Q
    |||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  34017381 accagcaaaaatgaaaaagttttgacgatacattacatgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttgaaatg 34017480  T
Q  136 atgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaa 235  Q
    | |||||||||||||||||| ||||||||||  ||||||||||||||| |||||        |||| ||||||||            |||| ||| ||||    
T  34017481 aagatttttacccaaaattttgcacttttggaatttttggaggtggagtgaaag--aaaaaatggaactttgtgg------------ttttgaacaaaaa 34017566  T
Q  236 tagtatttaac----gcaagttaacatgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcgtaggggcatttcggtcctttactttg 331  Q
    |||||||||||    |||||||||||||||| ||| |||      ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  34017567 tagtatttaacgcatgcaagttaacatgcgctacgtgac------ttaagtcacgtagcgcatgtttacttgcgtaggggtatttcggtcatttactttg 34017660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 316
Target Start/End: Complemental strand, 38739690 - 38739439
Alignment:
Q  56 tttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaattt 155  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||| |||||||| ||    
T  38739690 tttgacggtacattacctgttctttgatgcttgatgagcgtagaa-cttgtttcctgacgatttgcaatgatttagaatgaagattttgacccaaaaatt 38739592  T
Q  156 cgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaa 255  Q
    | ||||||| ||||||||||||||||||||||||        ||||||||||||||||  || ||| |||| ||||||||||||| ||| ||  ||||||    
T  38739591 ctcactttttgggtttttggaggtggagggaaag--aaaaaatggagctttgtggttgtttgttgggttttgaacgaaaatagtacttagcgtgagttaa 38739494  T
Q  256 catgcgccacgggacttaagtttaagtcacgtagcgcatgttaacttgcgtaggggcattt 316  Q
        | | ||| |||      |||||||||||| |||||| ||||||||||||||||||||    
T  38739493 gtcaccctacgtgac------ttaagtcacgtaacgcatgctaacttgcgtaggggcattt 38739439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 276
Target Start/End: Original strand, 33143948 - 33144125
Alignment:
Q  98 gaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnn 197  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||            
T  33143948 gaaacttgttttctgacgatttgcaatgatttggaatgaagattttcacccaaaatttcgcatttttgggggttttggaggtggagggaaag-aaaaaaa 33144046  T
Q  198 tggagctttgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaagt 276  Q
    ||||| |||||||||| ||||||| |||| ||| ||||| ||| ||| |||| |||||||||| | ||| |||||||||    
T  33144047 tggagttttgtggttgtctgctgggttttgaaccaaaattgtacttagcgcatgttaacatgccctacgtgacttaagt 33144125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 32910726 - 32910589
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| ||||||||||| || |||||||| ||| ||||||||||||||| ||||| ||||  ||||| |||||||    
T  32910726 gagttttgatgatacaatacctgatatttggtgcttgatgagtgtagaaacttgcttcatgacgatttgcaatggtttgggatgagaattttgacccaaa 32910627  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    | ||||||||||| ||||||||| ||||||||||||||    
T  32910626 aattcgcactttttgggtttttgaaggtggagggaaag 32910589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 29195851 - 29195962
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||||||||| |||| ||| || ||| ||||  | |||||||| ||||||||| ||    
T  29195851 tttggtgcttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggatgaggatattgacctaaaaaattgcactttttgggtttttgaag 29195950  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  29195951 gtggagggaaag 29195962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 20887691 - 20887802
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||| ||||| |||||||  ||||||||||||||||||||||||| |||| |||||| || |||||  || ||||||| ||||||||| ||    
T  20887691 tttggtgcttgataagcgtagaaactttcttcctgacgatttgcaatgatttgggatgaggattttgactcaaaaaatcccactttttgggtttttgaag 20887790  T
Q  178 gtggagggaaag 189  Q
    ||| ||||||||    
T  20887791 gtgtagggaaag 20887802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 16109403 - 16109323
Alignment:
Q  108 tcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||  |||||||||| ||||||||||||||||||||||||    
T  16109403 tcctgacgattt-caataatttggaatgaagattttgacccaaaaaatcgcactttttgggtttttggaggtggagggaaag 16109323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 15235063 - 15235165
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttaccc-aaaatttcgcacttttggggtttttgga 176  Q
    |||||||||||||||| ||   |||||| || ||||||||||||||||||||||||||| |||||| |||| ||||  | |||||||| |||||||||||    
T  15235063 tttgatgcttgatgagtgtatgaacttgctttctgacgatttgcaatgatttggaatgaagattttgacccaaaaaaattgcactttttgggtttttgga 15235162  T
Q  177 ggt 179  Q
    |||    
T  15235163 ggt 15235165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 8736462 - 8736538
Alignment:
Q  107 ttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggag 183  Q
    ||||||| |||||||||||||||| ||||| |||||| |  ||||| || |||||||| ||||||||||||||||||    
T  8736462 ttcctgatgatttgcaatgatttgaaatgaagattttgattcaaaaatttgcactttttgggtttttggaggtggag 8736538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 35050308 - 35050386
Alignment:
Q  111 tgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    ||||||||||||||||||||| |||| |||||| ||||||||  ||| ||||||    |||||| ||||||||||||||    
T  35050308 tgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgtactttttttatttttgaaggtggagggaaag 35050386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 6706032 - 6706077
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttgg 332  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||    
T  6706032 tagcgcatgttaacatgcgtaggggcatttcagtcatttactttgg 6706077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 28677968 - 28677924
Alignment:
Q  286 gtagcgcatgttaacttgcgtaggggcatttcggtcctttacttt 330  Q
    ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  28677968 gtagcgcatgttaacttacgtaggggtatttcggtcatttacttt 28677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 30491734 - 30491705
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgt 306  Q
    ||||||||||||||||||||||||||||||    
T  30491734 ttaagtcacgtagcgcatgttaacttgcgt 30491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 33144184 - 33144224
Alignment:
Q  290 cgcatgttaacttgcgtaggggcatttcggtcctttacttt 330  Q
    |||| |||||| |||||||||||||||||||| ||||||||    
T  33144184 cgcaagttaacatgcgtaggggcatttcggtcatttacttt 33144224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 8277135 - 8277389
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||||||||    
T  8277135 actgaaatgaaaaacgaaactactagcaaaaccagcaaaaatgaaaaagttttgacgatacattacctgttctttgatacttgatgagcgtagaaacttg 8277234  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||        ||||||||    
T  8277235 tttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcatttttgaggtttttggaggtggagggaaag--aaaaaatggagctt 8277332  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagtatttaacgcaagttaacatgcgc 262  Q
    ||||||||||| |||| |||| ||| ||||||||  || ||||||||||||||||||    
T  8277333 tgtggttgcctactgggttttgaacaaaaatagtgcttgacgcaagttaacatgcgc 8277389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 11574015 - 11573772
Alignment:
Q  36 accagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatg 135  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  11574015 accagcaaaaatgaaaaagttttgacggtacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaatg 11573916  T
Q  136 atgatttttacccaaaatttc-------gcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaa 228  Q
    | |||||||||||||||||||       |||||||||||||||||||||||||||||||||        |||||||||||||||| ||||||| |||| |    
T  11573915 aagatttttacccaaaatttcgcacatcgcacttttggggtttttggaggtggagggaaag--aaaaaatggagctttgtggttgtctgctgggttttga 11573818  T
Q  229 acgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||||||| || ||||| ||||||||||||||| ||| |||||||    
T  11573817 acgaaaataatacttaacacaagttaacatgcgctacgtgacttaa 11573772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 31133486 - 31133288
Alignment:
Q  35 aaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaat 134  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||  | |||||||||||| |||||||||    
T  31133486 aaccagcaaaaacgaatgagttttgacggtacattacctgttctttgatgcttgatgaacatagaaacttgttttataacgatttgcaataatttggaat 31133387  T
Q  135 gatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaa 234  Q
    || |||||| |||||||| ||| ||||||| ||||||||||||||||||||| |         ||||||||||||||||||| |||| |||| |||||||    
T  31133386 gaagattttgacccaaaaattctcactttttgggtttttggaggtggagggata--aaaaaaatggagctttgtggttgcctactgggttttgaacgaaa 31133289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 20927515 - 20927640
Alignment:
Q  64 tacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttt 163  Q
    ||||| ||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||    
T  20927515 tacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcacttt 20927614  T
Q  164 tggggtttttggaggtggagggaaag 189  Q
    | ||||||||| ||||||||||||||    
T  20927615 ttgggtttttgaaggtggagggaaag 20927640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 22787786 - 22787910
Alignment:
Q  65 acatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcactttt 164  Q
    |||| |||| |||| ||||||||||||||||| |||||||  ||| ||||||||||||||||||| |||||| |||||| |||||||| ||||||||||     
T  22787786 acataacctattctatgatgcttgatgagcgtagaaacttacttcatgacgatttgcaatgatttagaatgaagattttgacccaaaaattcgcacttta 22787885  T
Q  165 ggggtttttggaggtggagggaaag 189  Q
     ||||||||||||||||||||||||    
T  22787886 tgggtttttggaggtggagggaaag 22787910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 9829368 - 9829479
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggag 177  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||| | ||||||| ||    
T  9829368 tttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgagtttttgaag 9829467  T
Q  178 gtggagggaaag 189  Q
    ||||||||||||    
T  9829468 gtggagggaaag 9829479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 35000573 - 35000448
Alignment:
Q  64 tacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttt 163  Q
    ||||| |||||||||||||||||||||||| ||  | ||||| |||||| |||||||||||||||||||| || |||||| |||||||| ||||||||||    
T  35000573 tacattacctgttctttgatgcttgatgagtgtatagacttgcttcctggcgatttgcaatgatttggaacgaagattttgacccaaaagttcgcacttt 35000474  T
Q  164 tggggtttttggaggtggagggaaag 189  Q
    | |||||||| |||||||| ||||||    
T  35000473 ttgggtttttagaggtggaaggaaag 35000448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 8273323 - 8273280
Alignment:
Q  290 cgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  8273323 cgcatgttaacatgcgtaggggcatttcggtcatttactttggg 8273280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 31133270 - 31133231
Alignment:
Q  277 ttaagtcacgtagcgcatgttaacttgcgtaggggcattt 316  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  31133270 ttaagtcacgtagcgcatgttaacttgtgtaggggcattt 31133231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 8277394 - 8277444
Alignment:
Q  296 ttaacttgcgtaggggcatttcggtcctttactttgggcatgcgcggaacc 346  Q
    |||||||||||| ||||||||||||| ||||||||||| ||| ||||||||    
T  8277394 ttaacttgcgtaagggcatttcggtcatttactttgggaatgagcggaacc 8277444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 38062 - 38292
Alignment:
Q  6 actgaaatgaaaaacgatactaccagcaaaaccagcaaaaatgaaagagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttg 105  Q
    |||||||| |||||||  |||||||| |||||||||||||| ||| |||||||||| |||||| |  |||||||||||||||||||||||| ||||||||    
T  38062 actgaaataaaaaacgtaactaccagaaaaaccagcaaaaaggaa-gagttttgactgtacattatatgttctttgatgcttgatgagcgtagaaacttg 38160  T
Q  106 tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaagnnnnnnnntggagctt 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||||        |||||||     
T  38161 tttcctgacgatttgcaatgatttggaatgaagatttttacccaaaaatttgcactttttggctttttggaggtggagggaaag---aaaaatggagctg 38257  T
Q  206 tgtggttgcctgctggattttaaacgaaaatagta 240  Q
    ||||||||| | ||||||||| |||||||||||||    
T  38258 tgtggttgcatactggattttgaacgaaaatagta 38292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 2369656 - 2369793
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||| |||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||| |||||| |||||||    
T  2369656 gagttttgaggatacattacctgttctttgatgcttgatgagtgtagaaacttgcttcatgacgatttgcaatgatttggaatgaagattttgacccaaa 2369755  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    | ||| ||||||| |||||||| |||||||||||||||    
T  2369756 aattcacactttttgggtttttagaggtggagggaaag 2369793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 44222149 - 44222013
Alignment:
Q  53 agttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaa 152  Q
    |||||||| | ||||  ||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||    
T  44222149 agttttgatgatacaatacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaa 44222050  T
Q  153 tttcgcacttttggggtttttggaggtggagggaaag 189  Q
      |||||||||| ||||||||| ||||||||||||||    
T  44222049 aatcgcactttttgggtttttgaaggtggagggaaag 44222013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 4452398 - 4452517
Alignment:
Q  70 acctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggt 169  Q
    |||||||||||||||||||||||  || |||||||| ||||||| |||||||||| ||||||||||| |||||| |||||||| ||||||||||| ||||    
T  4452398 acctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaattcgcactttttgggt 4452497  T
Q  170 ttttggaggtggagggaaag 189  Q
    |||||||| |||||||||||    
T  4452498 ttttggagatggagggaaag 4452517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 23941484 - 23941347
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||||||| |||||||| ||| ||||||||||||||||||||| |||| |||||| ||| |||    
T  23941484 gagttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgaggattttgaccaaaa 23941385  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    | ||||||||||| ||||||||| ||||||||||||||    
T  23941384 aattcgcactttttgggtttttgaaggtggagggaaag 23941347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 11356480 - 11356343
Alignment:
Q  52 gagttttgacggtacatcacctgttctttgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaa 151  Q
    ||||||||| | ||||  ||||| | |||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||  ||||| |||||||    
T  11356480 gagttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgatgatttgcaatgatttgggatgagaattttgacccaaa 11356381  T
Q  152 atttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |  |||||||||| ||||||||| ||||||||||||||    
T  11356380 aaatcgcactttttgggtttttgaaggtggagggaaag 11356343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 4278718 - 4278606
Alignment:
Q  78 tttgatgcttgatgagcgtggaaacttg-tttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttgga 176  Q
    |||| |||||||||||||| |||||||  |||||||||||| ||||||||||||| |||| |||||| ||| |||| ||| ||||||||||||||||| |    
T  4278718 tttggtgcttgatgagcgtagaaacttactttcctgacgatgtgcaatgatttgggatgaggattttgaccaaaaaattctcacttttggggtttttgaa 4278619  T
Q  177 ggtggagggaaag 189  Q
    |||||||||||||    
T  4278618 ggtggagggaaag 4278606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 4452757 - 4452839
Alignment:
Q  107 ttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    ||||||| |||||||||| ||||||||||| |||||| |||||||| || ||||||||  |||||||||||||||||||||||    
T  4452757 ttcctgatgatttgcaattatttggaatgaagattttgacccaaaaatttgcactttttaggtttttggaggtggagggaaag 4452839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 31731021 - 31730919
Alignment:
Q  80 tgatgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggt 179  Q
    ||||| |||||||| || |||||||| ||||||||||||||||||||| || ||||| ||| || ||||| || |||||||| || ||||||||||||||    
T  31731021 tgatgtttgatgagtgtagaaacttgcttcctgacgatttgcaatgatatgaaatgaagatattgacccacaa-ttcgcactctttgggtttttggaggt 31730923  T
Q  180 ggag 183  Q
    ||||    
T  31730922 ggag 31730919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 13070509 - 13070575
Alignment:
Q  123 atgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||||||||||||| |||||| ||||||||  || ||||||| ||||||||||||||||||||||||    
T  13070509 atgatttggaatgaagattttgacccaaaaaatcacactttttgggtttttggaggtggagggaaag 13070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 5169 - 5215
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttggg 333  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  5169 tagcgcatgttaacatgcgtaggggcatttcggtcatttactttggg 5215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 12868725 - 12868627
Alignment:
Q  82 atgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacc-caaaatttcgcacttttggggtttttggaggtg 180  Q
    |||||||||||| || |||||||  ||||| |||||||| ||||||||| ||||| |||||| |||  |||| || |||||||| |||||||||||||||    
T  12868725 atgcttgatgagtgtagaaacttacttcctcacgatttgtaatgatttgaaatgaagattttgaccaaaaaaatttgcactttt-gggtttttggaggtg 12868627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 10526860 - 10526940
Alignment:
Q  158 cacttttggggtttttggaggtggagggaaagnnnnnnnntggagctttgtggttgcctgctggattttaaacgaaaatagta 240  Q
    ||||||| || |||||||||||||||||||||        |||||||||||||||||||||||| |||| | |||||||||||    
T  10526860 cactttttggatttttggaggtggagggaaagaaaaaa--tggagctttgtggttgcctgctgggttttgatcgaaaatagta 10526940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 38386255 - 38386210
Alignment:
Q  287 tagcgcatgttaacttgcgtaggggcatttcggtcctttactttgg 332  Q
    |||||||||||||| ||||||||||||||||  || ||||||||||    
T  38386255 tagcgcatgttaacatgcgtaggggcatttcaatcatttactttgg 38386210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 8791 - 8686
Alignment:
Q  83 tgcttgatgagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtgga 182  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||| |||| |||||| |||||||| ||||||||||| ||||||||| |||||||    
T  8791 tgcttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtgga 8692  T
Q  183 gggaaa 188  Q
    ||||||    
T  8691 gggaaa 8686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 2163 - 2065
Alignment:
Q  91 gagcgtggaaacttgtttcctgacgatttgcaatgatttggaatgatgatttttacccaaaatttcgcacttttggggtttttggaggtggagggaaag 189  Q
    |||||| |||||||| |||||||||||||||||||||||   ||||  ||||||||||||||  |||||||||| ||||||||  ||||||||||||||    
T  2163 gagcgtagaaacttgcttcctgacgatttgcaatgatttaagatgagcatttttacccaaaaaatcgcactttttgggtttttaaaggtggagggaaag 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 24258 - 24304
Alignment:
Q  228 aacgaaaatagtatttaacgcaagttaacatgcgccacgggacttaa 274  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||||    
T  24258 aacgaaaatagcacttaacgcaagttaacatgcgccacgtgacttaa 24304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University