View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_25 (Length: 324)
Name: NF3001_low_25
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 43149173 - 43148856
Alignment:
| Q |
1 |
atttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaacacaataactattgaactatccgtttaccacttgagatcattg |
100 |
Q |
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| T |
43149173 |
atttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaacacaataactattgaactatccgtttaccacttgagatcattg |
43149074 |
T |
|
| Q |
101 |
attttgaaagtatacttcaagatcatctttnnnnnnnncattgctatatgtactctacataatattattattttttaatctctcgatctaggtacaaata |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43149073 |
attttgaaagtatacttcaagatcatctttaaaaaaaacattgctatatgtactctacataatattattattttttaatctctcgatctaggtacaaata |
43148974 |
T |
|
| Q |
201 |
ttataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatg--tctgtctttcattacnnnnnnnnntatgtctgtcttttagctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
43148973 |
ttataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatgtctctgtctttcattacaaaaaaaaatatgtctgtcttttagctt |
43148874 |
T |
|
| Q |
299 |
aatttttccttgtcctat |
316 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
43148873 |
aatttttccttgttctat |
43148856 |
T |
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