View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_28 (Length: 304)
Name: NF3001_low_28
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 35482880 - 35482604
Alignment:
| Q |
18 |
gatggtaatcgtctatggaatctggatcttcaaaaaataacgctggaagaggttatgaccaatccaaatcaatggagaataaacattaaaagctgtatga |
117 |
Q |
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| T |
35482880 |
gatggtaatcgtctatggaatctggatcttcaagaaataacgctggaagaggttatgaccaatccaaatcaatggagaataaacattaaaagctgtatga |
35482781 |
T |
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| Q |
118 |
ggttgcagcgattaagtctcttaacaggaaactaattccatttaaccaagctgaccccagaaagctactcacgcatcaaacaatggaaggaatgcaacca |
217 |
Q |
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| T |
35482780 |
ggttgcagcgattaagtctcttaacaggaaactaattccatttaaccaagctgaccccagaaagctactcacgcatcaaacaatggaaggaatgcaacca |
35482681 |
T |
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| Q |
218 |
accagctcagcataagtgacagatcagaatgaattcggcaaatacctaggagttgcaatgattaccttggagttcat |
294 |
Q |
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| T |
35482680 |
accagctcagcataagtgacagatcagaatgaattcggcaaatacctaggagctgcaatgattaccttggagttcat |
35482604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 35483117 - 35483017
Alignment:
| Q |
92 |
gagaataaacattaaaagctgt------atgaggttgcagcgattaagtctcttaacaggaaactaattccatttaaccaagctgaccccagaaagctac |
185 |
Q |
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| T |
35483117 |
gagaataaacattaaaagctatgagcccatgaggttacagtgattacgtctcttaacggaaaaccaattcgaattaaccaagctgaccctagaaggctac |
35483018 |
T |
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| Q |
186 |
t |
186 |
Q |
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| T |
35483017 |
t |
35483017 |
T |
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