View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3001_low_3 (Length: 665)

Name: NF3001_low_3
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3001_low_3
NF3001_low_3
[»] chr6 (11 HSPs)
chr6 (18-515)||(11170743-11171240)
chr6 (18-465)||(11209565-11210012)
chr6 (18-453)||(11276127-11276562)
chr6 (21-448)||(11196899-11197326)
chr6 (18-468)||(11156443-11156895)
chr6 (21-448)||(11241005-11241438)
chr6 (21-347)||(11200064-11200394)
chr6 (18-347)||(11161310-11161651)
chr6 (62-444)||(11133211-11133593)
chr6 (585-655)||(11171312-11171382)
chr6 (602-647)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (18-514)||(1061-1538)
[»] chr7 (19 HSPs)
chr7 (84-162)||(8382727-8382805)
chr7 (84-162)||(8602213-8602291)
chr7 (81-162)||(13333307-13333388)
chr7 (81-161)||(10494226-10494306)
chr7 (81-161)||(8585558-8585638)
chr7 (589-648)||(2407345-2407404)
chr7 (81-160)||(8628768-8628847)
chr7 (602-648)||(7875716-7875762)
chr7 (81-155)||(27830733-27830807)
chr7 (88-150)||(29577532-29577594)
chr7 (81-162)||(8654686-8654767)
chr7 (81-162)||(8667655-8667736)
chr7 (82-162)||(6789749-6789829)
chr7 (81-161)||(8671482-8671562)
chr7 (588-648)||(40352657-40352717)
chr7 (88-162)||(3147515-3147589)
chr7 (84-162)||(7877584-7877662)
chr7 (84-162)||(8538275-8538353)
chr7 (602-644)||(41415672-41415714)
[»] scaffold0734 (2 HSPs)
scaffold0734 (594-648)||(1908-1962)
scaffold0734 (411-465)||(6714-6770)
[»] chr4 (3 HSPs)
chr4 (82-162)||(9335742-9335822)
chr4 (82-161)||(30775489-30775568)
chr4 (81-162)||(35132684-35132765)
[»] chr2 (4 HSPs)
chr2 (81-162)||(7542462-7542543)
chr2 (81-161)||(16661844-16661924)
chr2 (81-162)||(16657368-16657449)
chr2 (81-161)||(14703644-14703724)
[»] chr5 (1 HSPs)
chr5 (602-646)||(5003527-5003571)
[»] chr1 (3 HSPs)
chr1 (81-161)||(34466645-34466725)
chr1 (603-648)||(33096059-33096104)
chr1 (322-380)||(15595516-15595571)
[»] chr8 (1 HSPs)
chr8 (602-648)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 11170743 - 11171240
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170743 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 11170842  T
Q  118 ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170843 ttgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 11170942  T
Q  218 ccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcatt 317  Q
    ||| |||| ||||||||||| | | ||| |||||||||  ||||||  |||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  11170943 cctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcatt 11171042  T
Q  318 atagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccga 417  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11171043 atagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccga 11171142  T
Q  418 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  11171143 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg 11171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 11209565 - 11210012
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 117  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  11209565 caaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctca 11209664  T
Q  118 ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209665 ttgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 11209764  T
Q  218 ccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcatt 317  Q
    | | |||||||||||||||| | ||||| ||| ||||   |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||    
T  11209765 catccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcttt 11209864  T
Q  318 atagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccga 417  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  11209865 atagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccga 11209964  T
Q  418 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209965 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 11276127 - 11276562
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||||||||||||||    
T  11276127 caaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctca 11276226  T
Q  118 ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 217  Q
    || | |||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11276227 tttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacat 11276326  T
Q  218 ccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcatt 317  Q
    ||| ||||||| |||||||| | ||||| |||||||||  |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  11276327 cctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcatt 11276426  T
Q  318 atagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccga 417  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11276427 atagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccga 11276526  T
Q  418 ccaattagcctctttgcatctacaaaacaaaagaga 453  Q
    ||||||||||||||||||||||||||||||||||||    
T  11276527 ccaattagcctctttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 21 - 448
Target Start/End: Original strand, 11196899 - 11197326
Alignment:
Q  21 agtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattg 120  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  11196899 agtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattg 11196998  T
Q  121 agtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcct 220  Q
    | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11196999 attattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcct 11197098  T
Q  221 tcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattata 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11197099 tcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattata 11197198  T
Q  321 gttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgacca 420  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| ||||    
T  11197199 gttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctacca 11197298  T
Q  421 attagcctctttgcatctacaaaacaaa 448  Q
    ||||||||||||||||||||||||||||    
T  11197299 attagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 11156443 - 11156895
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 117  Q
    |||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||    
T  11156443 caaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctca 11156542  T
Q  118 ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 217  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11156543 ttgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacat 11156642  T
Q  218 ccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcatt 317  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  11156643 ccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcttt 11156742  T
Q  318 atagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccga 417  Q
    |||||||||||||||||| ||||||||||| ||||  |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| |    
T  11156743 atagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttccta 11156842  T
Q  418 ccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactatg 468  Q
    ||||||||||||||||||||||||||||||  || ||||||| ||||||||||    
T  11156843 ccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 21 - 448
Target Start/End: Complemental strand, 11241438 - 11241005
Alignment:
Q  21 agtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattg 120  Q
    ||||||||||||||| || ||||| | ||||| |||||||||||||||||  | ||||| || ||||||||||||||||||| |||||||||||||| ||    
T  11241438 agtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtg 11241339  T
Q  121 agtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcct 220  Q
    | ||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11241338 attattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatcct 11241239  T
Q  221 tcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattata 320  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  11241238 tcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattata 11241139  T
Q  321 gttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgca------aaatttc 414  Q
    |||||||| | ||||  |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||  ||||| || ||      ||| |||    
T  11241138 gttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttc 11241039  T
Q  415 cgaccaattagcctctttgcatctacaaaacaaa 448  Q
    | ||||||||||||||||||||||||||||||||    
T  11241038 ctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 347
Target Start/End: Original strand, 11200064 - 11200394
Alignment:
Q  21 agtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattg 120  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  11200064 agtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattg 11200163  T
Q  121 agtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacagttataacaaca 216  Q
    | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||    ||||| ||||||||||||| ||||||| |||||||||||    
T  11200164 attattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaaca 11200263  T
Q  217 tccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcat 316  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  11200264 tccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcat 11200363  T
Q  317 tatagttaacaacaatcataggtttgtcatt 347  Q
    ||||||||||||||||||| |||||||||||    
T  11200364 tatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 11161310 - 11161651
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggct-- 115  Q
    |||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||      
T  11161310 caaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctag 11161409  T
Q  116 ------cattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgt----tgtgagtcattaaagtatgcaggcacag 205  Q
          |||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||    |||||  |||||||||||| |||||||     
T  11161410 tagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaa 11161509  T
Q  206 ttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgctt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| ||||||||||||||    
T  11161510 ttataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgctt 11161609  T
Q  306 ttcctcgtcattatagttaacaacaatcataggtttgtcatt 347  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  11161610 ttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 62 - 444
Target Start/End: Original strand, 11133211 - 11133593
Alignment:
Q  62 catgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| |||||    
T  11133211 catgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatc 11133310  T
Q  162 tcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatt 261  Q
    || |||||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| || |||||    |||    
T  11133311 tctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatt 11133410  T
Q  262 tttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcataggtttgtcattcaggtcaccaatta 361  Q
    |||| ||||||||| ||||||||||| |||||||||||||| ||||||||  |||| || || ||||||||  | ||||||||||| | | |||||||||    
T  11133411 tttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaatta 11133510  T
Q  362 ctttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa 444  Q
    |||| ||||||||||| |||| |||||| || ||||| || || | |||||  | |||||| |||||||| ||||||||||||    
T  11133511 ctttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 585 - 655
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
Q  585 ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg 655  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11171312 ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg 11171382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
Q  602 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag 647  Q
    |||||||||  |||||| |||||| |||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaatcag 8382149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 1061 - 1538
Alignment:
Q  18 caaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctca 117  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||     |||||||   ||||| |||||||||||||||||||||||||||||||    
T  1061 caaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctca 1157  T
Q  118 ttgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 217  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1158 ttgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacat 1257  T
Q  218 ccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcatt 317  Q
    ||| |||||||||||||||| | ||||| ||| |||||  |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  1258 cctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcatt 1357  T
Q  318 atagttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccga 417  Q
    |||||||||||||||||| ||||| |                   | ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1358 atagttaacaacaatcatgggtttat------------------gtatgaatggccacaacttcacatcactttctactatgggatcgcaaaatttccga 1439  T
Q  418 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnnttggatcgctttatgaattaatcattctatgtggattt 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||| |||||||||| |||||||||||    
T  1440 ccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaattgtatcgctttatgtattaatcattttatgtggattt 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
Q  84 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
Q  84 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 648
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
Q  589 ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    |||| ||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2407345 ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 2407404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 160  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 648
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
Q  602 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 7875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 155  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  88 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 150  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
Q  82 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 648
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
Q  588 accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    ||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||||||    
T  40352657 accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc 40352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
Q  88 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
Q  84 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
T  7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
Q  84 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
T  8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 644
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
Q  602 acaatcttgggattttggtcccttgtaaaaaacaataacaaat 644  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaat 41415714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 648
Target Start/End: Original strand, 1908 - 1962
Alignment:
Q  594 taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  1908 taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 465
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  411 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 465  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
Q  82 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
Q  82 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 162  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||||||||||||||| || || || ||||| ||||| | ||  | ||||||||||||||| |||||| |||| |||||    
T  14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc 14703724  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 646
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
Q  602 acaatcttgggattttggtcccttgtaaaaaacaataacaaatca 646  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaatca 5003571  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
Q  81 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 161  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 648
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
Q  603 caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    ||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaatcagc 33096104  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  322 ttaacaacaatcataggtttgtcattcaggtcaccaattactttgaatggccacaactt 380  Q
    ||||||| |||||| |||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 602 - 648
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
Q  602 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 648  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaatcagc 18896505  T

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