View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_30 (Length: 287)
Name: NF3001_low_30
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 31532951 - 31533214
Alignment:
| Q |
17 |
gaaccttccagtggcaactgaataaggaaaatcaattccataataagggacattggcttttgcagtagagttgataaaattgttggttccaacatcaaat |
116 |
Q |
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| T |
31532951 |
gaaccttccagtggcaactgaataaggaaaatcaattccataataagggacattggcttttgcagtagagttgataaaattgttggttccaacatcaaat |
31533050 |
T |
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| Q |
117 |
gttgagtcaccaaatatgaataatgttggtgcagctttaacctcattagctacgtaaatgtcaagcattgtgagagataagagaacaaagaaaaagactg |
216 |
Q |
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| T |
31533051 |
gttgagtcaccaaaaatgaataatgttggtgcagctttaacctcattagctacgtaaatgtcaagcattgtgagagataagagaacaaagaaaaagactg |
31533150 |
T |
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| Q |
217 |
aagcataattaatagaaaaattattgcttgatgtcattttatgtcccttattgtagtataatct |
280 |
Q |
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| T |
31533151 |
aagcataattaattgaaaaattattgcttgatgtcattttatgtcccttattgtagtagaatct |
31533214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 31536395 - 31536269
Alignment:
| Q |
43 |
gaaaatcaattccataataagggacattggcttttgcagtagagttgataaaattgttggttccaacatcaaatgttgagtcaccaaatatgaataatgt |
142 |
Q |
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|||||||||| |||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
31536395 |
gaaaatcaatcccataataagggctatttgcttttgttttagagttgagaaaattgttagttcctacatcaaatgttgagtcaccaaataagtataatgt |
31536296 |
T |
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| Q |
143 |
tggtgcagctttaacctcattagctac |
169 |
Q |
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| T |
31536295 |
tggtgcagctttaatctcatcagctac |
31536269 |
T |
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