View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_32 (Length: 276)
Name: NF3001_low_32
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 39624981 - 39625229
Alignment:
| Q |
17 |
aaaattgggaccctccctcctaattgaatgttgcggcttatcattctcgtgctatactcctactcataatgtctcatgatgcatataaattggtcacttt |
116 |
Q |
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| T |
39624981 |
aaaattgggaccctccctcctaattgaatgttgcggcttatcattctcgtgctatactcctactcataatgtctcatgatgcatataaattggtcacttt |
39625080 |
T |
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| Q |
117 |
ttctattcagtgaacatgattgtggggcttccaggcaacaagcattgggttggcacgtttctttcatcaagtaagaaccacttgtgagattttatgaagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625081 |
ttctattcagtgaacatgattgtggggcttccaggcaacaagcattgggttggcacgtttctttcatcaagtaagaaccacttgtgagattttatgaagt |
39625180 |
T |
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| Q |
217 |
gaaattacatgtttcttcttgaaggaagttctgatattgaaccagttca |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625181 |
gaaattacatgtttcttcttgaaggaagttctgatattgaaccagttca |
39625229 |
T |
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