View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_35 (Length: 264)
Name: NF3001_low_35
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 46855544 - 46855799
Alignment:
| Q |
9 |
tggagaagcaaaggtataaggttaacgtttgtgtcgcaagatacgtttctaccacttgcatatataaattgtagtttggaagaccaaattaaagaacttt |
108 |
Q |
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| T |
46855544 |
tggagtagctaaggtataaggttaacgtttgtgtcgcaagatacgtttctaccacttgcatata--aattgtagtttggaagaccaaattaaagaacttt |
46855641 |
T |
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| Q |
109 |
tgattccactgtatcacttttttgaaacctacgttactcggtttcaactttccattcttcacagcatcggtccgccgcatacctttttcgttgtcataac |
208 |
Q |
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| T |
46855642 |
tgattccactgtatcacttttttgaaacctacgttactcggtttcaactttccattcttcacagcatcggtccgccgcatacctttttcgttgtcataac |
46855741 |
T |
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| Q |
209 |
aaaattcnnnnnnnnnnnn--ggcaactgtcataatttttcttttatcatttccattt |
264 |
Q |
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| T |
46855742 |
aaaattcttttttttttttttggcaactgtcataatttttcttttatcacttccattt |
46855799 |
T |
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