View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_36 (Length: 251)
Name: NF3001_low_36
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4971588 - 4971823
Alignment:
| Q |
1 |
tcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttgaaattttgtttctttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971588 |
tcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttgaaattttgtttctttga |
4971687 |
T |
|
| Q |
101 |
gacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggatttaagggaaacgaatttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4971688 |
gacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggatttaagggaaactaatttgt |
4971787 |
T |
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| Q |
201 |
caggaagcatcccaactgagcttagtagaaaattat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4971788 |
caggaagcatcccaactgagcttagtagaaaattat |
4971823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4989497 - 4989731
Alignment:
| Q |
1 |
tcaataaataaactgagttagtaaaaaacattaatgagggttacttgttttaattccctatattttaccatcttttttatttgaaattttgtttctttga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989497 |
tcaataaataaactgagttagtaaaa-acattaatgagggttacttgttttaattccctatattttaccatcttttttatttgaaattttgtttctttga |
4989595 |
T |
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| Q |
101 |
gacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggatttaagggaaacgaatttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4989596 |
gacagtgtgctatgcaataataacttttctggtgacattcctaaagaacttggagatctagctgagctagagttattggatttaagggaaactaatttgt |
4989695 |
T |
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| Q |
201 |
caggaagcatcccaactgagcttagtagaaaattat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4989696 |
caggaagcatcccaactgagcttagtagaaaattat |
4989731 |
T |
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Back To:
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