View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_37 (Length: 251)
Name: NF3001_low_37
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_37 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 48482696 - 48482929
Alignment:
| Q |
18 |
aaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccnnnnnnngagcaaattcagaagaaaaagtagcagctt |
117 |
Q |
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| T |
48482696 |
aaatgcttacttccataaaaatctatatattgattatggacataaatgactttgctgccctccaaaaaaagagcaaattcagaagaaaaagtagcagctt |
48482795 |
T |
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| Q |
118 |
cagatcaaggactagtttaaatttaagtaaaaggatcatcatacttaccgccatgctatatcccatccttgatgcacacatcacgtgaaaatatgtagca |
217 |
Q |
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| T |
48482796 |
cagatcaaggactagtttaaatttaagtaaaaggatcatcatacttaccgccatgctatatcccatccttgatgcacacatcacgtgaaaatatgtagca |
48482895 |
T |
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| Q |
218 |
cacttgcaacaacttgtacaggaaccatgacttt |
251 |
Q |
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| T |
48482896 |
cacttgcaacaacttgtacaggaaccatgacttt |
48482929 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 10037661 - 10037595
Alignment:
| Q |
185 |
cttgatgcacacatcacgtgaaaatatgtagcacacttgcaacaacttgtacaggaaccatgacttt |
251 |
Q |
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| T |
10037661 |
cttgatgcgcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggcttt |
10037595 |
T |
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