View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_44 (Length: 238)
Name: NF3001_low_44
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 47311262 - 47311063
Alignment:
| Q |
24 |
gttcatctttgaactctaatccgtcactttcttgttgatcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaat |
123 |
Q |
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| T |
47311262 |
gttcatctttgaactctaatccatcactttcttgttgatcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaat |
47311163 |
T |
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| Q |
124 |
caaatactgatgttctttaaataactccataactccttctttcacagcttctgtatcaattctttgggccttgaaatctttcataagttctaaaaattct |
223 |
Q |
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| T |
47311162 |
caaatattgatgttctttaaataactccataactctttctttcacagcttctgtatcaattctttgggccttgaaatctttcataagttctaaaaattct |
47311063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 47316308 - 47316204
Alignment:
| Q |
61 |
atcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaatcaaatactgatgttctttaaataactccataactcct |
160 |
Q |
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| T |
47316308 |
atcatcatccaatggaagtgagatttcatgtcctggtggcaagaagatgttgaatcttaaaattaaatcttgatgttctttcaacaactccgtaactcct |
47316209 |
T |
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| Q |
161 |
tcttt |
165 |
Q |
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||||| |
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| T |
47316208 |
tcttt |
47316204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 47307187 - 47307018
Alignment:
| Q |
24 |
gttcatctttgaactctaatccgtcactttcttgttgatcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaat |
123 |
Q |
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| T |
47307187 |
gttcatcttcgaatgctaatccatcacctcgttgttcatcatcatccaatggaagtgagatttcttgtcctggtggcaagaagatgttgaatcttgaaat |
47307088 |
T |
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| Q |
124 |
caaatactgatgttctttaaataactccataactccttctttcacagcttctgtatcaattctttgggcc |
193 |
Q |
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||| | ||| ||||| || |||||| | | |||||||||||||||| || ||||||||||| |||| |
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| T |
47307087 |
taaacctttatgatcttttaacaactccgtcattccttctttcacagctgctcgatcaattctttcggcc |
47307018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 47314574 - 47314442
Alignment:
| Q |
56 |
tgttgatcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaatcaaatactgatgttctttaaataactccataa |
155 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||| | ||| ||||||| ||||||||||||| |||| ||||| |||||||| |||||||||| |
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| T |
47314574 |
tgttgatcattatccaatggaaatgaaatttcatgtcctggttgcaagaagatgctgaatcttgaaattaaatcttgatgctctttaaacaactccataa |
47314475 |
T |
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| Q |
156 |
ctccttctttcacagcttctgtatcaattcttt |
188 |
Q |
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| T |
47314474 |
ctccttctttgacaactcttttatcaattcttt |
47314442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 47319804 - 47319714
Alignment:
| Q |
75 |
gaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaatcaaatactgatgttctttaaataactccataactccttcttt |
165 |
Q |
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|||||| |||||||| ||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |||||||||| ||||||||| |
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| T |
47319804 |
gaagtgggatttcatctcctggtggcaagaagatgttgaatcttgaaattaaatcttgatgttctttcaacaactccataattccttcttt |
47319714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 47316566 - 47316462
Alignment:
| Q |
61 |
atcatcatccaatggaagtgagatttcatgtcctgatggcatgaagatgttgaatcttgaaatcaaatactgatgttctttaaataactccataactcct |
160 |
Q |
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|||| ||||||||| ||||||||||| ||||| ||||| |||| ||||||||| ||||| |||| | ||| |||||||| |||||||| | |||| |
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| T |
47316566 |
atcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctttaaacaactccatcattcct |
47316467 |
T |
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| Q |
161 |
tcttt |
165 |
Q |
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||||| |
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| T |
47316466 |
tcttt |
47316462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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