View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_47 (Length: 237)
Name: NF3001_low_47
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_47 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48592071 - 48591835
Alignment:
| Q |
1 |
aattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaaaaga |
100 |
Q |
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| T |
48592071 |
aattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagctgaaaaatgaaaaga |
48591972 |
T |
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| Q |
101 |
aataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgtgaatcaaacttatat |
200 |
Q |
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| T |
48591971 |
aataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgtgattcaaacttatat |
48591872 |
T |
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| Q |
201 |
gcatggcgttatattttggataactgttaataacttt |
237 |
Q |
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| T |
48591871 |
gcatggccttatattttggataactgttaataacttt |
48591835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 48601766 - 48601530
Alignment:
| Q |
1 |
aattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaaaaga |
100 |
Q |
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| T |
48601766 |
aattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcaacttcttgtttctctttaagtaagagagaagctgaaaaatgaaaaga |
48601667 |
T |
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| Q |
101 |
aataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaatgcacaattgagaagtgttgtgaatcaaacttatat |
200 |
Q |
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| T |
48601666 |
aataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcactttgaatgcacaattgagaagtgttgtgattcaaacttatat |
48601567 |
T |
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| Q |
201 |
gcatggcgttatattttggataactgttaataacttt |
237 |
Q |
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| T |
48601566 |
gcatggccttatattttggataactgttaataacttt |
48601530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 48597484 - 48597410
Alignment:
| Q |
159 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttatattttggataactgttaataa |
233 |
Q |
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| T |
48597484 |
tttgaatgcacaattgagaagtgttgtgaatcaaacttatatgcatggcgttatattttggataaccgttaataa |
48597410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 23232261 - 23232421
Alignment:
| Q |
1 |
aattattggtattgctggtggacttggagggtgaggtggtaatcgtgcatgcgacttcttgtttctctttaagtaagagagaagctgaaaaatgaaaaga |
100 |
Q |
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|||||||||||||| |||||||||||||||| ||| ||||| ||| || || |||||||||||||| ||| |||| ||| | | || ||||||| |
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| T |
23232261 |
aattattggtattgttggtggacttggaggg--agg-ggtaaatgtggttgtgatttcttgtttctcttaaagacggagaaaagtgggagaaggaaaaga |
23232357 |
T |
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| Q |
101 |
aataggagcaaaatcatagctaatgagaaggaatgggaaatcatattggtttattcgttttgaa |
164 |
Q |
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| T |
23232358 |
agaaggagcacaatcatagctaataagaaggaatgagaaatcatcttgttttattagctttgaa |
23232421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23224928 - 23224964
Alignment:
| Q |
1 |
aattattggtattgctggtggacttggagggtgaggt |
37 |
Q |
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| T |
23224928 |
aattattggtattgctagtggacttggagggtaaggt |
23224964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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