View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_52 (Length: 227)
Name: NF3001_low_52
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4971280 - 4971506
Alignment:
| Q |
1 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971280 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
4971379 |
T |
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| Q |
101 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatatgcattttttaaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4971380 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatgtgcattttttaaaag |
4971479 |
T |
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| Q |
201 |
gaaatcatctttcaatgtaggattctg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4971480 |
gaaatcatctttcaatgtaggattctg |
4971506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4989189 - 4989415
Alignment:
| Q |
1 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989189 |
atctttatattgcaaccacaattgtagtactgaatagtatgacttgtgttcttgtagggacctaaatgggctatcattggaagggacattggctcctgag |
4989288 |
T |
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| Q |
101 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatatgcattttttaaaag |
200 |
Q |
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| T |
4989289 |
cttgggaaactaagtcacttaaaatctctgtaaggaatctaatattgatgttcttctgttagaatatgcatttttctaacaaatgtgcattttttaaaag |
4989388 |
T |
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| Q |
201 |
gaaatcatctttcaatgtaggattctg |
227 |
Q |
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| T |
4989389 |
gaaatcatctttcaatgtaggattctg |
4989415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 35835092 - 35835005
Alignment:
| Q |
49 |
ttcttgtagggacctaaatgggctatcattggaagggacattggctcctgagcttgggaaactaagtcacttaaaatctctgtaagga |
136 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||||| ||||| | ||||||||||| | |||||||||||||||||||||| |
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| T |
35835092 |
ttcttgcagggacctaaatggccaatcattggaagggacattgactcctcatcttgggaaacttaatcacttaaaatctctgtaagga |
35835005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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