View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3001_low_55 (Length: 219)
Name: NF3001_low_55
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_55 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0152 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 219
Target Start/End: Complemental strand, 31274777 - 31274554
Alignment:
| Q |
4 |
gagataagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagct |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
31274777 |
gagagaagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaatttatatagaagctaagaggtatactatattacaatgagct |
31274678 |
T |
|
| Q |
104 |
gaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaacgt--------cgttactgctgtaactacaccttattctcttg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||| ||| ||||||||| |
|
|
| T |
31274677 |
gaagcatagagtattggaactcttctaactaactgtaaacaaactaaagttaggtaacttgctacgcaagttactgttgtaactactcctcattctcttg |
31274578 |
T |
|
| Q |
196 |
ttttccttcttcatgtgttagccc |
219 |
Q |
| |
|
||||||||| | |||||||||||| |
|
|
| T |
31274577 |
ttttccttcatgatgtgttagccc |
31274554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 20123772 - 20123616
Alignment:
| Q |
4 |
gagataagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagct |
103 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| ||||||||||| |||||| |
|
|
| T |
20123772 |
gagagaagaaatagatgaataatattctcattaattgatgaa-taatgaaggagtaaaacttatatagaagctaagtggtgcactatattacagtgagct |
20123674 |
T |
|
| Q |
104 |
gaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaac |
161 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
20123673 |
taagcatagagtattagaactcttctaactaactgaaaactaactaaagctagataac |
20123616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 39236213 - 39236065
Alignment:
| Q |
4 |
gagataagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagct |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |
|
|
| T |
39236213 |
gagagaagaaatagatgaataacattctcattaattgatgaa-taatgaaggagtacaacttatatagaagctaagtggtgtactatattacaatgaggt |
39236115 |
T |
|
| Q |
104 |
gaagcatagagtattggaactcttctaactaactgtaaacaaactaaagc |
153 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| || ||| ||||||||| |
|
|
| T |
39236114 |
gtagcatagagtattagaactcttctaactaattgataactaactaaagc |
39236065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 23369669 - 23369791
Alignment:
| Q |
14 |
atagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcataga |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||| |||||||||| | ||||||||| |
|
|
| T |
23369669 |
atagatgaagaacattctcattaattgatgaa-taatgaaggagtacaacttatatagaaactaagtggtgtactatgttacaatgaggtcaagcataga |
23369767 |
T |
|
| Q |
114 |
gtattggaactcttctaactaact |
137 |
Q |
| |
|
||||| |||||| ||||||||||| |
|
|
| T |
23369768 |
gtattagaactcatctaactaact |
23369791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 26216052 - 26215968
Alignment:
| Q |
78 |
agaggtgtactatatt-acaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctaggtaac |
161 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
26216052 |
agaggtgtactatatttacaatgagctgaagcatagagtattagaactcttctaactaactagaaactaactaaagctaggtaac |
26215968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 8736824 - 8736974
Alignment:
| Q |
4 |
gagataagaaatagatgaataacattctcattaattgatgaaataatgaaggagtacaacttataaagaagctaagaggtgtactatattacaatgagct |
103 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| | || || | ||||||||||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
8736824 |
gagagaagaaatagatgaataatattctcattaattgatgaatgagtgtag-attacaacttatatagattctaagtggtgtactacattacaatgaggc |
8736922 |
T |
|
| Q |
104 |
gaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctag |
156 |
Q |
| |
|
| ||||||||| | |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
8736923 |
ataacatagagtagtaaaactcttctaactaactg-aaaccaactaaagctag |
8736974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 1756 - 1858
Alignment:
| Q |
58 |
tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg |
157 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
1756 |
tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga |
1854 |
T |
|
| Q |
158 |
taac |
161 |
Q |
| |
|
|||| |
|
|
| T |
1855 |
taac |
1858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 6003 - 6105
Alignment:
| Q |
58 |
tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg |
157 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
6003 |
tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga |
6101 |
T |
|
| Q |
158 |
taac |
161 |
Q |
| |
|
|||| |
|
|
| T |
6102 |
taac |
6105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 21198000 - 21198102
Alignment:
| Q |
58 |
tacaacttataaagaagctaagaggtgtactatattacaatgagctgaagcatagagtattggaactcttctaactaactgtaaacaaactaaagctagg |
157 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
21198000 |
tacaacttatatagcctctaagaggtgcactatattacaatgagacatagcatagagtattaaaactcttgtaactaacag-aaactaactaaagctaga |
21198098 |
T |
|
| Q |
158 |
taac |
161 |
Q |
| |
|
|||| |
|
|
| T |
21198099 |
taac |
21198102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University