View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_58 (Length: 208)
Name: NF3001_low_58
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 29053938 - 29053767
Alignment:
| Q |
16 |
atgaatgaacatctgcatttaatcatcaatgattgaacgccgtaataatgatacaaatacaactccttttagtggaccaaagcggtttcatcatgtacat |
115 |
Q |
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| T |
29053938 |
atgaatgaacatctgcatttaatcatcaatgattgaacgccgtaataatgatacaaatacaactccttttagtggaccaaaacggtt---tcatgtacat |
29053842 |
T |
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| Q |
116 |
tcgttaactgaacttgagagacaacctagttaaggataagttgtctggtatatgagttacacgtacagtgtcaca |
190 |
Q |
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| T |
29053841 |
tcgttaactgaacttgagagacaacctagttaaggataagttgtctggtatatgagttacacgtacagtgtcaca |
29053767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 29050753 - 29050599
Alignment:
| Q |
16 |
atgaatgaacatctgcatttaatcatcaatgattgaacgccgtaataatgatacaaatacaactccttttagtggaccaaagcggtttcatcatgtacat |
115 |
Q |
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|||| ||||||| ||||||| |||||||||||| ||| | |||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||| |
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| T |
29050753 |
atgattgaacatgtgcatttcatcatcaatgatcgaatgtcgtaataatgatacaaatacaactactttcagtggaccaaagttgtttcat---gtacat |
29050657 |
T |
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| Q |
116 |
tcgttaactgaacttgagagacaacctagttaaggataagttgtctggtatatgagtt |
173 |
Q |
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| T |
29050656 |
tcgttaagtgaacttgagagacaacatagttaaggatatgttgtctggtatctgagtt |
29050599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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