View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_6 (Length: 521)
Name: NF3001_low_6
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 51403592 - 51403091
Alignment:
| Q |
1 |
ccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcgagaagtacccaggctgcaacatcattaacagcagctgctgacatt |
100 |
Q |
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| T |
51403592 |
ccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcaagaagtacccaggctgcaacatcattaacagcagctgctgacatt |
51403493 |
T |
|
| Q |
101 |
gctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403492 |
gctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaa |
51403393 |
T |
|
| Q |
201 |
ggaaagggacaggttgtgcacctttggagattgtggctctaagaacaatggatgttcctatgccaagaacaaatgggaatgtgattccacagagggcaat |
300 |
Q |
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| T |
51403392 |
ggaaagggacaggttgtgcacctttggagattgtggctctaagaacaacggatgttcctatgccaagaacaaatgggaatgtgattccacaaagggcaat |
51403293 |
T |
|
| Q |
301 |
tgctaaggcttttttacctgttctacggattgaacgcatgtcgagttcaagacctactaggaataagaagaacaaaagaccaatgttggctagtgtgtct |
400 |
Q |
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| T |
51403292 |
tgctaaggcttttttacctgttctacggattgaacgcatgtcgagttcaagacctactaggaataagaagaacaaaagaccaatgttggctagtgtgtct |
51403193 |
T |
|
| Q |
401 |
aggactgttaagcttctctttgggaaaactgtgtgtaggaatttctcacttcgacctattgctgatggtccaagcagtattcctccctgcgttgaacatt |
500 |
Q |
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| T |
51403192 |
aggactgttaagcttctctttgggaaaactgtgtgtaggaatttctcgcttcgacctattgctgatggtccaagcagtattcctccctgcattgaacatt |
51403093 |
T |
|
| Q |
501 |
tt |
502 |
Q |
| |
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|| |
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| T |
51403092 |
tt |
51403091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 50 - 426
Target Start/End: Original strand, 29983284 - 29983660
Alignment:
| Q |
50 |
agagcgagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggttagcagtttgagctcagctaggattc |
149 |
Q |
| |
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||||| ||||||| ||| || || || ||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||| ||||||||||||| |
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| T |
29983284 |
agagcaagaagtatccaagcagcgacgtcattgacagcagcagctgacattgccatccgaccaacatcggttgtgaggagtttgagttcagctaggattc |
29983383 |
T |
|
| Q |
150 |
gagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaaagggacaggttgtgcacctttggagattgtggctctaagaacaat |
249 |
Q |
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|||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||||| | || | ||| ||||| |||||||| | |||||||| |
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| T |
29983384 |
gagcaaggacaggaaaggctgtgatcgagagagcaacgcccatgaaaacaaggaaggaagttggattagcatctttgtttattgtggcacgaagaacaag |
29983483 |
T |
|
| Q |
250 |
ggatgttcctatgccaagaacaaatgggaatgtgattccacagagggcaattgctaaggcttttttacctgttctacggattgaacgcatgtcgagttca |
349 |
Q |
| |
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|| || || |||||||| |||||||||| |||||||||| ||||| || |||||||||| ||||||| | || || |||||||||||||||||| |
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| T |
29983484 |
tgaggtgccaatgccaagtacaaatgggactgtgattccagcaagggctatgcataaggcttttgaacctgttttgcgtatcgaacgcatgtcgagttca |
29983583 |
T |
|
| Q |
350 |
agacctactaggaataagaagaacaaaagaccaatgttggctagtgtgtctaggactgttaagcttctctttgggaa |
426 |
Q |
| |
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||||||||||| ||||||||||| | || ||||||||||||||||| || || |||||||||||||| || ||||| |
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| T |
29983584 |
agacctactagaaataagaagaatagcaggccaatgttggctagtgtatcaagaactgttaagcttcttttagggaa |
29983660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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