View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_7 (Length: 497)
Name: NF3001_low_7
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 22 - 484
Target Start/End: Complemental strand, 11390705 - 11390243
Alignment:
| Q |
22 |
acgacatgactgcattgaatcataatgtctttcatttgactgcagtggtttgtttgaatacaaaccattaaactcttgcattgcatgtttagtcaaaaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390705 |
acgacatgactgcattgaatcataatgtctttcatttgactgcagttgtttgtttgaatacaaaccattaaactcttgcattgcatgtttagtcaaaaag |
11390606 |
T |
|
| Q |
122 |
caaaatagttgaatcttatcatgttagctaagtctcatttgactattcagaaaacatgcaatggtttggtttgaaaaatcaaaatcaacaatctacttat |
221 |
Q |
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| T |
11390605 |
caaaatagttgaatcttatcatgttagctaagtctcatttgactattcagaaaacatgcaatggtttggtttgaaaaatcaaaatcaacaatctacttat |
11390506 |
T |
|
| Q |
222 |
ttccattcattcattcctcgttttatttccattcaattactaacaatgtcatcatcaccaatcaacactccttctccaccaccttatgaccgtgttaaag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390505 |
ttccattcattcattcctcgttttatttccattcaattactaacaatgtcatcatcaccaatcaacactccttctccaccaccttatgaccgtgttaaag |
11390406 |
T |
|
| Q |
322 |
cggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactct |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11390405 |
cggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccacccgaaactct |
11390306 |
T |
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| Q |
422 |
atccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
484 |
Q |
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| T |
11390305 |
atccgacctcactccacgatcagatttcccccaaccggaaattcccaccatcgacctctctgc |
11390243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 298 - 481
Target Start/End: Original strand, 11433750 - 11433933
Alignment:
| Q |
298 |
caccaccttatgaccgtgttaaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcatt |
397 |
Q |
| |
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||||||| || |||||||| ||||| ||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| || |
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| T |
11433750 |
caccaccctacgaccgtgtgaaagccttgaaagaattcgacgaaacaaaatccggcgtaaaaggcataatcgactccggaatcaaaaccattccatcttt |
11433849 |
T |
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| Q |
398 |
cttcatccatccactcgaaactctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
481 |
Q |
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| T |
11433850 |
cttcatccatccacctgaaaccctatctgacctcactccacgatcagatttcccccaaccgaaaatccccacaatcgacctctc |
11433933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 318 - 481
Target Start/End: Original strand, 11423145 - 11423308
Alignment:
| Q |
318 |
aaagcggtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaa |
417 |
Q |
| |
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||||| |||||||||||||| ||||| |||| || ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |
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| T |
11423145 |
aaagccgtgaaagaattcgacgaaacaaaatccggcgtaaaaggcttaatcgactccggaatcaaaaccattccatctttcttcatccatccacctgaaa |
11423244 |
T |
|
| Q |
418 |
ctctatccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
481 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
11423245 |
tcctatctgacctcactccacgatcagatttcccccaaccggaaatccccacaatcgacctctc |
11423308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 481
Target Start/End: Original strand, 11427898 - 11428055
Alignment:
| Q |
324 |
gtgaaagaattcgatgaaaccaaattaggtgtaaaaggcctaacagactccggaatcaaaaccatcccatcattcttcatccatccactcgaaactctat |
423 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||||| ||| |||| ||||||||||||||| ||||| ||||| || || |||| ||||||||||| |
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| T |
11427898 |
gtgaaagaattcgatgaaacaaaatccgacgtaaaaggcttaatcgacttcggaatcaaaaccattccatctttctttattcacccacccgaaactctat |
11427997 |
T |
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| Q |
424 |
ccgacctcattccacgatcagatttcccccaaccggaaattcccaccatcgacctctc |
481 |
Q |
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|||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11427998 |
ccgatctcactccacgatcagatttcccccaaccagaaattcccacaatcgacctctc |
11428055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 11433682 - 11433714
Alignment:
| Q |
251 |
cattcaattactaacaatgtcatcatcaccaat |
283 |
Q |
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| T |
11433682 |
cattcaattcctaacaatgtcatcatcaccaat |
11433714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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