View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3001_low_9 (Length: 454)
Name: NF3001_low_9
Description: NF3001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3001_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 5968772 - 5969054
Alignment:
| Q |
23 |
atatattaatcaaataaacattattttattatatagtaacacttttgtctaaattagactctctttacttgtttattactcctaatacatttaacattat |
122 |
Q |
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| T |
5968772 |
atatactaataaaataaacattattttattatagaggaacacttttgtctaaattagactctctttacttgtttattactcctaatacatttaacattat |
5968871 |
T |
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| Q |
123 |
gcttttgatataattctttagtcacaaacactttggcaataacaatgtagctttcttagaaaaaagtaataataatttgatgcaactttgaatatgataa |
222 |
Q |
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| T |
5968872 |
gcttttgatataattctttagtcacaaacactttggcaataacaatgtagctttcttagaaaaaagtaataataatttgattcaactttgaatatgataa |
5968971 |
T |
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| Q |
223 |
tgtgacattaaccgtgtatatacaaccgcgtcaaaaaccattcaattcaacgtgcgtttcatgccgtgcaaacagacattaag |
305 |
Q |
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| T |
5968972 |
tgtgacattaatcgtgtgtatacaaccgcgtcaaaaaccattcaattcaacgtgcgtttcatgccgtgcaaacagacattaag |
5969054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 347 - 437
Target Start/End: Original strand, 5969094 - 5969182
Alignment:
| Q |
347 |
ctcaattgttggtgtaaatcgtgtaatatttgatgatagaatggagataaaaacatctctggattttctctaaaagattgagccatgataa |
437 |
Q |
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| T |
5969094 |
ctcaattgttggtgtaaatcgtgtaatatttgataatagaatggagataaaaacatctctggattttctct--aagattgagccatgataa |
5969182 |
T |
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