View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_104 (Length: 249)
Name: NF3002_high_104
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_104 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 2512211 - 2511971
Alignment:
| Q |
9 |
acgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacc |
108 |
Q |
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| T |
2512211 |
acgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacc |
2512112 |
T |
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| Q |
109 |
tgaaggtgtgacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagac |
208 |
Q |
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| T |
2512111 |
tgaaggtgtaacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagac |
2512012 |
T |
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| Q |
209 |
ttcgtcctgcctcatatcagagaagggaaggttgtgtatgt |
249 |
Q |
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| T |
2512011 |
ttcgtcctgcctcatatcagagaagggaaggttgtgtatgt |
2511971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 2505582 - 2505350
Alignment:
| Q |
17 |
ggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505582 |
ggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtg |
2505483 |
T |
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| Q |
117 |
tgacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagacttcgtcct |
216 |
Q |
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| T |
2505482 |
tgacaaatttggcacatatcgtatataagcgggtccgtttgcaaggttttattgtagctgattactatcatctatacggaaaattcttggagtttgtcct |
2505383 |
T |
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| Q |
217 |
gcctcatatcagagaagggaaggttgtgtatgt |
249 |
Q |
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| T |
2505382 |
gcctcatatcagagaagggaaggttgtgtatgt |
2505350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 2516480 - 2516242
Alignment:
| Q |
11 |
gttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctg |
110 |
Q |
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||||| || |||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2516480 |
gttgggggaaagacacttgatgctgtactcttgaatatgaaactccatggccgcatacctgtgtgtggaatgatctcacagtataatcttactcaacctg |
2516381 |
T |
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| Q |
111 |
aaggtgtgacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagactt |
210 |
Q |
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| T |
2516380 |
aaggtgtcacaaatttggcacatatcatatataagcggattcgtatgcaaggtttcaccgtagctaattattatcatctatacaccaaattcttagagtt |
2516281 |
T |
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| Q |
211 |
cgtcctgcctcatatcagagaagggaaggttgtgtatgt |
249 |
Q |
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| T |
2516280 |
tgtcctgcctcatataagagaaggtagggttgtgtatgt |
2516242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 2429541 - 2429770
Alignment:
| Q |
20 |
aagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtga |
119 |
Q |
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|||||||||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2429541 |
aagacacttgatgctgtactcttgaatatgaaactccatgggcggatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtca |
2429640 |
T |
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| Q |
120 |
caaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagacttcgtcctgcc |
219 |
Q |
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||||||||||||||||||||||||||||||| || || ||||||||| ||| |||| ||||||||||| ||| | || ||||| || || | ||||| |
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| T |
2429641 |
caaatttggcacatatcatatataagcggatccggatggaaggttttgctgtatttgaatactatcatctttatacaaaattcttggagtttatgctgcc |
2429740 |
T |
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| Q |
220 |
tcatatcagagaagggaaggttgtgtatgt |
249 |
Q |
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|| ||| |||||||| |||||||||||||| |
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| T |
2429741 |
tcttataagagaaggaaaggttgtgtatgt |
2429770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 2432514 - 2432752
Alignment:
| Q |
11 |
gttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctg |
110 |
Q |
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| T |
2432514 |
gttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcatacctgtaagtggaatgatctcacagtataatctcactcaacctg |
2432613 |
T |
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| Q |
111 |
aaggtgtgacaaatttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagactt |
210 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||| || | |||||||| || |||||||| ||| || ||| | || ||||| || || |
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| T |
2432614 |
aaggtgtcacaaatttggcacaaatcatatataagcggattcggttcgagggttttgttatatctgattactttcacctttatacaaaattcttggaatt |
2432713 |
T |
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| Q |
211 |
cgtcctgcctcatatcagagaagggaaggttgtgtatgt |
249 |
Q |
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|||||||||| ||| |||||||| ||| |||||||||| |
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| T |
2432714 |
tgtcctgcctcttataagagaaggaaagattgtgtatgt |
2432752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 2435887 - 2436113
Alignment:
| Q |
23 |
acacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaaggtgtgacaa |
122 |
Q |
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||||||||||| ||||| ||||| |||| | | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2435887 |
acacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacagtacaatcttactcaacctgaaggtgtcacaa |
2435986 |
T |
|
| Q |
123 |
atttggcacatatcatatataagcggattcgtttgcaaggttttgtcgtagttgattactatcatctatatgccaagttcttagacttcgtcctgcctca |
222 |
Q |
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|||||||||| |||||||||||||||||||| | | |||||||| || |||||||| ||| || ||| | || ||||| || || |||||||||| |
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| T |
2435987 |
atttggcacaaatcatatataagcggattcggatcgagggttttgttatatctgattactttcacctttatacaaaattcttggagtttgtcctgcctct |
2436086 |
T |
|
| Q |
223 |
tatcagagaagggaaggttgtgtatgt |
249 |
Q |
| |
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||| |||||||| |||||||||||||| |
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| T |
2436087 |
tataagagaaggaaaggttgtgtatgt |
2436113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 2496907 - 2496765
Alignment:
| Q |
11 |
gttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctg |
110 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | | || || |||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2496907 |
gttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcatacctgcatgtggaatgatctcacagtacaatcttacgcaacctg |
2496808 |
T |
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| Q |
111 |
aaggtgtgacaaatttggcacatatcatatataagcggattcg |
153 |
Q |
| |
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||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
2496807 |
aagctgtaacgaatttggcacatatcatatataagcggattcg |
2496765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 32260020 - 32260106
Alignment:
| Q |
26 |
cttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcacagtacaatcttactcaacctgaa |
112 |
Q |
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|||||||| |||||| | || |||||||| ||||||||||| || | ||||||||||| || |||||||||||| |||| |||||| |
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| T |
32260020 |
cttgatgcagtactcctaaatatgaaactccatggtcgcattgctatatgtggaatgatttcccagtacaatcttcctcatcctgaa |
32260106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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