View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_115 (Length: 243)
Name: NF3002_high_115
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_115 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 39972299 - 39972514
Alignment:
| Q |
18 |
aaaatccactaccccgttttttctggatagcatgagatatgattggttcaacaattgttcgcgagaagttcgtgataaaaaagcatcgggacaaatagca |
117 |
Q |
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| T |
39972299 |
aaaatccactaccccgttttttctggatagcatgagatatgattggttcaacaattgtttgcgagaagttcgtgataaaaa-gcatcgggacaaatagca |
39972397 |
T |
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| Q |
118 |
ttcctgaaacataaaataggagtggtaggagtt-gtcccactatacttttggtacaacatatttattctgtctgcagttacagatttactactgcagttt |
216 |
Q |
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| T |
39972398 |
ttc---------aaaataggagtagtaggagtttgtcccactatacttttg-tacaacatatttattctgtctgcagttacagatttactactgcagttt |
39972487 |
T |
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| Q |
217 |
atgtttagacattttttgccctcaaat |
243 |
Q |
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| T |
39972488 |
atgtttagacattttttgccctcaaat |
39972514 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 1880523 - 1880451
Alignment:
| Q |
46 |
agcatgagatatgattggttcaacaattgttcgcgagaagttcgtgat-aaaaaagcatcgggacaaatagcatt |
119 |
Q |
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| T |
1880523 |
agcatgagatatgattggtttaacactagtttgcgagaagt--gtgataaaaaaagcttcgggataaatagcatt |
1880451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 5915832 - 5915763
Alignment:
| Q |
49 |
atgagatatgattggttcaacaattgttcgcgagaagttcgtgataaaaaagcatcgggacaaatagcatt |
119 |
Q |
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| T |
5915832 |
atgagatgtgattggttcaacattagtttgcgaggagtttgtgat-aaaaagcctcgggacaaatcgcatt |
5915763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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