View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_118 (Length: 240)
Name: NF3002_high_118
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_118 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9084970 - 9084765
Alignment:
| Q |
18 |
gacccaaatcgggtgatccgattttcaagtttgatattttggatttagaacaaaaatccacatcagcatattttgtgaaccgtctgatctgaatccaact |
117 |
Q |
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| T |
9084970 |
gacccaaatcgggtgatccgattttcaagtttgatattttggatttagaacaaaaatccacatcagcatattttgtgaaccgtctgatctgaatccaact |
9084871 |
T |
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| Q |
118 |
gtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaaggaatccatattgcttgactttattcttgtgaacttgttttgatttttgagga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9084870 |
gtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaaggaatccatattgcttgactttattcttgtgaacttgttttgatttttgaggc |
9084771 |
T |
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| Q |
218 |
atggat |
223 |
Q |
| |
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|||||| |
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| T |
9084770 |
atggat |
9084765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9076211 - 9076005
Alignment:
| Q |
18 |
gacccaaatcgggtgatccgattttcaagtttgatattttggatttagaacaaa-aatccacatcagcatattttgtgaaccgtctgatctgaatccaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| || || |||||| ||||||||||||||| ||| ||||||||||||||| || |
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| T |
9076211 |
gacccaaatcgggtgatccgattttcaagtttgatattttagatttaaaaataataatccaaatcagcatattttgtcaactgtctgatctgaatccgac |
9076112 |
T |
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| Q |
117 |
tgtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaaggaatccatattgcttgactttattcttgtgaacttgttttgatttttgagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
9076111 |
tgtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaatgaatccatattgcttgactttattcttgtgaacttgttttcaattttgagg |
9076012 |
T |
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| Q |
217 |
aatggat |
223 |
Q |
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|||||| |
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| T |
9076011 |
catggat |
9076005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 6416174 - 6415969
Alignment:
| Q |
18 |
gacccaaatcgggtgatccgattttcaagtttgatattttggatttagaacaaaaatccacatcagcatattttgtgaaccgtctgatctgaatccaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6416174 |
gacccaaatcgggtgatccgattttcaagtttgatattttggatttagaacaaaaatccacatcagcatattttgtgaaccgtctgatctgaatccaact |
6416075 |
T |
|
| Q |
118 |
gtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaaggaatccatattgcttgactttattcttgtgaacttgttttgatttttgagga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6416074 |
gtcagcaatgcaatgtctgtgtgaatgcggtgatatcccaaccgcaaggaatccatattgcttgactttattcttgtgaacttgttttgatttttgaggc |
6415975 |
T |
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| Q |
218 |
atggat |
223 |
Q |
| |
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|||||| |
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|
| T |
6415974 |
atggat |
6415969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 25483108 - 25483032
Alignment:
| Q |
69 |
aaaaatccacatcagcatattttgtgaaccgtctgatctgaatccaactgtcagcaatgcaatgtctgtgtgaatgc |
145 |
Q |
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||||||| | ||| |||| ||||||||| ||| ||||||||||||| |||| ||||||| || |||||||||||| |
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| T |
25483108 |
aaaaatcaaaatctgcattttttgtgaattgtccaatctgaatccaacagtcaccaatgcactgactgtgtgaatgc |
25483032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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