View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_122 (Length: 238)
Name: NF3002_high_122
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_122 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42631980 - 42631760
Alignment:
| Q |
18 |
ttaacgagtctttcacttttattctagataacatttatttgcatttgaatttaattcaatatttaaattgagagtcatcttcagtcttgcacttttgttt |
117 |
Q |
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| T |
42631980 |
ttaacgagtctttcacttttattctagataacatgtatttgtatttgaatttaattcaatatttaaattgagaaacatcttcaatcttacacttttgttt |
42631881 |
T |
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| Q |
118 |
tagataacatgaatttctgtttaaacttgattcaatattgataaatattttagtttattagatatttggtccatactttgatctttaatcgttgcatatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42631880 |
tagataacatgaatttctgtttaaacttgattcaatattgataaatattttagtttattagatatttggtccatagtttgatctttaatcgttgcatatg |
42631781 |
T |
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| Q |
218 |
agaaaatatatattggaatat |
238 |
Q |
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||||||||||||||||||||| |
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| T |
42631780 |
agaaaatatatattggaatat |
42631760 |
T |
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