View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_124 (Length: 237)
Name: NF3002_high_124
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_124 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 164287 - 164507
Alignment:
| Q |
1 |
atagaaaaattcctaatttatcttcttttccctcacttgataattttacttaagagctcactaaagaaaacttagatccttccttcaatgattcctagtt |
100 |
Q |
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| T |
164287 |
atagaaaaattcctaatttatcttcttttccctcacttgataattttacttaagagctcactaaagaaaacttagatccttccttcaatgattcctagtt |
164386 |
T |
|
| Q |
101 |
aacccaagtgtatgaaaagtgtttttcaaccatagaatctcacccataactccataaggcatcaagttttaatccttttaagtttttctcaaaaacttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164387 |
aacccaagtgtatgaaaagtgtttttcaaccatagaatctcacccataactccataaggcatcaagttttaatccttttaagtttttctcaaaaacttat |
164486 |
T |
|
| Q |
201 |
tcttttggtttctcaagattg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
164487 |
tcttttggtttctcaagattg |
164507 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 39238711 - 39238806
Alignment:
| Q |
48 |
acttaagagctcactaaagaaaacttagatccttccttcaatgattcctagttaacccaagtgtatgaaaagtgtttttcaaccatagaatctcac |
143 |
Q |
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| T |
39238711 |
acttaagaactcgctagagaaaacttagattcttcctccaacgatttctagctatccaacgtgtttgcaatgtgtttttcaaccctagaatttcac |
39238806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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