View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_126 (Length: 236)
Name: NF3002_high_126
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_126 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 55207963 - 55207792
Alignment:
| Q |
55 |
aaaaggaaattaattcaaagcgccacatctcatgtccaaaactgaagcatacgtacacgtagtatagtacccttccttttgtttttctaggatttccatt |
154 |
Q |
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| T |
55207963 |
aaaaggaaattaattcaaagcgcctcatctcatgtccaaaactgaagcatacgtacacgtagtatagtacccttccttttgtttttctaggatttccatt |
55207864 |
T |
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| Q |
155 |
ccaccgacatattttttcattcttttacctaccttacctcggaagctacctattcaagttagagaattgatg |
226 |
Q |
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| T |
55207863 |
ccaccgacatattttttcattcttttacttaccttacctcggaagctatctattcaagatagagaattgatg |
55207792 |
T |
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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 55208020 - 55207991
Alignment:
| Q |
1 |
taaaagaaagaaaataatcactcagatatt |
30 |
Q |
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| T |
55208020 |
taaaagaaagaaaataatcactcagatatt |
55207991 |
T |
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