View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_high_127 (Length: 230)

Name: NF3002_high_127
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_high_127
NF3002_high_127
[»] chr7 (12 HSPs)
chr7 (19-213)||(24939396-24939587)
chr7 (41-213)||(31494386-31494556)
chr7 (41-213)||(36355251-36355421)
chr7 (38-147)||(47031456-47031565)
chr7 (41-147)||(32630909-32631015)
chr7 (33-204)||(48545578-48545746)
chr7 (156-204)||(152014-152062)
chr7 (157-201)||(12963734-12963778)
chr7 (156-204)||(35089986-35090034)
chr7 (156-204)||(39301125-39301173)
chr7 (156-204)||(40097250-40097298)
chr7 (156-204)||(43057561-43057609)
[»] chr8 (12 HSPs)
chr8 (19-213)||(24296396-24296589)
chr8 (38-147)||(38806694-38806803)
chr8 (25-111)||(14723716-14723805)
chr8 (156-213)||(8502779-8502836)
chr8 (156-213)||(23185844-23185901)
chr8 (156-203)||(37857156-37857203)
chr8 (156-202)||(4403145-4403191)
chr8 (156-204)||(9457699-9457747)
chr8 (156-204)||(28620000-28620048)
chr8 (156-204)||(29260156-29260204)
chr8 (156-204)||(30382554-30382602)
chr8 (156-204)||(40265161-40265209)
[»] chr2 (10 HSPs)
chr2 (41-213)||(38822700-38822870)
chr2 (41-145)||(25684589-25684693)
chr2 (41-145)||(24935905-24936009)
chr2 (41-145)||(38536021-38536125)
chr2 (67-204)||(27090791-27090927)
chr2 (38-142)||(2373186-2373290)
chr2 (41-94)||(2485376-2485429)
chr2 (156-204)||(24193366-24193414)
chr2 (156-204)||(29941101-29941149)
chr2 (156-204)||(34028812-34028860)
[»] chr5 (6 HSPs)
chr5 (19-213)||(6902413-6902608)
chr5 (45-147)||(7857236-7857338)
chr5 (38-201)||(26876311-26876470)
chr5 (156-213)||(10571258-10571315)
chr5 (87-144)||(27786417-27786474)
chr5 (87-144)||(28594254-28594311)
[»] chr4 (7 HSPs)
chr4 (38-204)||(5117117-5117282)
chr4 (156-203)||(36479354-36479401)
chr4 (156-204)||(8583885-8583933)
chr4 (156-203)||(32322127-32322174)
chr4 (156-204)||(33450059-33450107)
chr4 (156-204)||(41581911-41581959)
chr4 (156-204)||(54509870-54509918)
[»] chr6 (4 HSPs)
chr6 (41-145)||(35165017-35165121)
chr6 (156-204)||(7497111-7497159)
chr6 (156-204)||(29834165-29834213)
chr6 (156-204)||(29865599-29865647)
[»] chr1 (7 HSPs)
chr1 (41-213)||(9191278-9191448)
chr1 (43-146)||(49459916-49460019)
chr1 (156-204)||(1928284-1928332)
chr1 (156-204)||(26882706-26882754)
chr1 (156-204)||(36402403-36402451)
chr1 (156-204)||(45318616-45318664)
chr1 (156-204)||(52705549-52705597)
[»] chr3 (12 HSPs)
chr3 (38-204)||(6783864-6784029)
chr3 (41-113)||(43151403-43151475)
chr3 (38-142)||(25712271-25712375)
chr3 (76-147)||(24574647-24574718)
chr3 (156-203)||(12103665-12103712)
chr3 (162-213)||(25713324-25713375)
chr3 (156-203)||(44276425-44276472)
chr3 (156-204)||(19552028-19552076)
chr3 (156-204)||(26005863-26005911)
chr3 (156-204)||(35731088-35731136)
chr3 (156-204)||(39338177-39338225)
chr3 (156-204)||(46252083-46252131)
[»] scaffold0016 (1 HSPs)
scaffold0016 (156-204)||(81662-81710)
[»] scaffold0237 (1 HSPs)
scaffold0237 (156-204)||(21293-21341)
[»] scaffold0202 (1 HSPs)
scaffold0202 (156-204)||(16422-16470)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 24939396 - 24939587
Alignment:
Q  19 aagaaaatataatgggagtaaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24939396 aagaaaatataatgggagtaaaagtctcaagaaatctcatgtctttgcatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctatt 24939495  T
Q  119 ctattaagaaattcattaaaatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    ||||||||||||||||||||||||||| |        |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24939496 ctattaagaaattcattaaaatctataaa--tttttgaataccaa-agactatttttaagttatgaaaaattttaattgaataccatcagatttt 24939587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 31494556 - 31494386
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||||||| ||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  31494556 agtctcaagaaatctcatgtttttgtatgagattgttagttttaaaatttttaaccaaaaagtttcacaaaatccattctaccaagtaatccattaaaat 31494457  T
Q  141 ctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    | |||||        ||||||||||||| ||||||||||| | ||||||||| ||||||||||| ||||||||    
T  31494456 caataca--ttttttaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagatttt 31494386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 36355251 - 36355421
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||| ||||||||||| ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| |||||||||    
T  36355251 agtcttaagaaatctcaggtctttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatccattatatcaaggaatccattaaaat 36355350  T
Q  141 ctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    |||||||        |||| |||  ||| |||||||||||  |||||||||| ||| ||||||||||||||||    
T  36355351 ctataca--tttttgaataacaaaggacaatttttaagttgagaaaaatcttgatttaataccatcagatttt 36355421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 47031565 - 47031456
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    |||||||||||||||||||  ||||||| ||||||| ||||||||||||||||  || |||||||| | |||||||| ||||||||||| |||||||| |    
T  47031565 aaaagtctcaagaaatctcgagtctttgtatgagattgttagttttaaaatttataattaaaaagttttacaaaatccattctattaagtaattcattga 47031466  T
Q  138 aatctataca 147  Q
    ||||||||||    
T  47031465 aatctataca 47031456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 32631015 - 32630909
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||| ||||||||||| ||| ||  ||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| ||| |||||||||    
T  32631015 agtcttaagaaatctcaggtccttatatgagattgttagttttaaaatttttaactaaaaagtctcacaaaatccattatatcaaggaatccattaaaat 32630916  T
Q  141 ctataca 147  Q
    |||||||    
T  32630915 ctataca 32630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 48545578 - 48545746
Alignment:
Q  33 ggagtaaaa-gtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaatt 131  Q
    ||||||||| |||||||||||||||| ||||||| |||| || ||||||||| ||||||| |||||||||||||||||||||| |||  | |||| |||     
T  48545578 ggagtaaaatgtctcaagaaatctcaagtctttgtatgaaattgttagttttgaaatttttaactaaaaagtctcacaaaatccatttcaataaggaatc 48545677  T
Q  132 cattaaaatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||| |||||||||||        ||||||||||||  |||||||||||  |||||||||| || ||||||||    
T  48545678 cattgaaatctataca--tttttgaataccaagaga--atttttaagttgcgaaaaatcttgatggaatacca 48545746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 152062 - 152014
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  152062 aataccattagacaatttttaagttatgcaaaatctcaattgaatacca 152014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 12963778 - 12963734
Alignment:
Q  157 ataccaagagactatttttaagttatgaaaaatcttaattgaata 201  Q
    |||||| |||||| ||||||||| |||||||||||| ||||||||    
T  12963778 ataccacgagactttttttaagtaatgaaaaatcttgattgaata 12963734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 35089986 - 35090034
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  35089986 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 35090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 39301125 - 39301173
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  39301125 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 39301173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 40097298 - 40097250
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  40097298 aataccaatagacaatttttaagttgtgcaaaatctgaattgaatacca 40097250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 43057561 - 43057609
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  43057561 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 43057609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 24296396 - 24296589
Alignment:
Q  19 aagaaaatataatgggagtaaaa-gtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctat 117  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||    
T  24296396 aagaaaatataatagaagtaaaaagtctcaagaaatctcatgtctttgcatgagattgttagttttaaaattttcaactaaaaagtcttacaaaatccat 24296495  T
Q  118 tctattaagaaattcattaaaatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    ||||  ||  ||| ||||||||||||||||        |||| ||||||||||||||||||||||||||  | || ||||||||||||||||||||    
T  24296496 tctaccaaagaatccattaaaatctataca--tttttgaatatcaagagactatttttaagttatgaaatttttttattgaataccatcagatttt 24296589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 38806694 - 38806803
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    |||| |||||| |||||||| ||||||  ||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| || |||| ||| |||| |    
T  38806694 aaaaatctcaaaaaatctcaagtctttatatgagattgttagttttaaaattttcaactaaaatgtctcacaatatccattatagtaaggaatccattga 38806793  T
Q  138 aatctataca 147  Q
    ||||||||||    
T  38806794 aatctataca 38806803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 14723716 - 14723805
Alignment:
Q  25 atataatgggagtaaaa---gtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaa 111  Q
    ||||||||| |||||||   ||||||||||||||||||| |||| ||||||| ||||||||||||| ||| ||||||||||||| |||||    
T  14723716 atataatggaagtaaaaagggtctcaagaaatctcatgtgtttgtatgagattgttagttttaaaaattttaactaaaaagtcttacaaa 14723805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 8502836 - 8502779
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    |||||||| |||| ||||||||||| || |||||||||||||||||||| | ||||||    
T  8502836 aataccaatagacaatttttaagttgtgcaaaatcttaattgaataccaccggatttt 8502779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 23185901 - 23185844
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    ||||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||||||    
T  23185901 aataccaggagacaatttttaagttgtgaaaaattttgattgaataccaccagatttt 23185844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 37857203 - 37857156
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacc 203  Q
    |||||||  ||||| ||||||||| |||||||||||||||||||||||    
T  37857203 aataccacaagactttttttaagtgatgaaaaatcttaattgaatacc 37857156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 4403191 - 4403145
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatac 202  Q
    ||||||| |||| | ||||||||| ||||||||||||||||||||||    
T  4403191 aataccacgagattttttttaagtgatgaaaaatcttaattgaatac 4403145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 9457747 - 9457699
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||| | |||| |||||||||||||| ||||||| ||||||||||||    
T  9457747 aataccgatagacaatttttaagttatgcaaaatctcaattgaatacca 9457699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 28620048 - 28620000
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  28620048 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 28620000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 29260156 - 29260204
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  29260156 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 29260204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 30382554 - 30382602
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  30382554 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 30382602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 40265161 - 40265209
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  40265161 aataccattagacaatttttaagttatgcaaaatctcaattgaatacca 40265209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 38822700 - 38822870
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||  ||| ||| |||| ||||    
T  38822700 agtctcaagaaatctcatgtctttgtatgagattgttagttttaaaattttcaactaaaaaatctcacaaaatccattataccaagtaatccattgaaat 38822799  T
Q  141 ctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    |||||||        ||||||||||||| ||||||||||| ||||||||||| || |||||||| | ||||||    
T  38822800 ctataca--ttttttaataccaagagacaatttttaagttgtgaaaaatcttgatcgaataccaccggatttt 38822870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 25684589 - 25684693
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||| ||||||||||| ||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  25684589 agtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaattcattaaaat 25684688  T
Q  141 ctata 145  Q
    |||||    
T  25684689 ctata 25684693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 24935905 - 24936009
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||| ||||||||||| ||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  24935905 agtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaatccattaaaat 24936004  T
Q  141 ctata 145  Q
    |||||    
T  24936005 ctata 24936009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 38536021 - 38536125
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||  ||| ||| |||||||||    
T  38536021 agtctcaagaaatctcacgtgtttgtatgagattgttagttttaaaattttcaactaaaaagtctcacaaaattcattgtagcaaggaatccattaaaat 38536120  T
Q  141 ctata 145  Q
    |||||    
T  38536121 ctata 38536125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 27090927 - 27090791
Alignment:
Q  67 atgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatctatacannnnnnnnaataccaagag 166  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||  |||||||||||||||        ||||||||| |    
T  27090927 atgagattgttagttttaaaattttcaactaaaaagtcttacaaaatccattctatcaagtaatctattaaaatctataca-tttttttaataccaaggg 27090829  T
Q  167 actatttttaagttatgaaaaatcttaattgaatacca 204  Q
    || ||||||||||| | ||||||| || ||||||||||    
T  27090828 acaatttttaagttgttaaaaatcatagttgaatacca 27090791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 2373290 - 2373186
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    ||||||||||| ||||||||  | |||   |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||  ||| ||| |||| |    
T  2373290 aaaagtctcaaaaaatctcagatatttatgtgagattgttagttttaaaattttcaactaaaaagtctcagaaaatccattctaccaagtaatccattga 2373191  T
Q  138 aatct 142  Q
    |||||    
T  2373190 aatct 2373186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 2485376 - 2485429
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaa 94  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  2485376 agtctcaagaaatctcaggtctttgtatgagattgttagttttaaaattctcaa 2485429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 24193366 - 24193414
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  24193366 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 24193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 29941149 - 29941101
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  29941149 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 29941101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 34028812 - 34028860
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  34028812 aataccaatagacaatttttaagttgtgcaaaatctgaattgaatacca 34028860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6902413 - 6902608
Alignment:
Q  19 aagaaaatataatgggagtaaaa---gtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatct 115  Q
    ||||| |||||||| ||||||||   ||||||||||||||||| |||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||     
T  6902413 aagaacatataatgagagtaaaaagagtctcaagaaatctcatatctttgtatgagattgttagttttacaatttttaactaaaaagtctcacaaaatca 6902512  T
Q  116 attctattaagaaattcattaaaatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    ||||||  ||| ||| |||| ||||| |||||        ||||||||||||| ||||||||||| | ||||||||| ||||||||||| ||||||||    
T  6902513 attctaccaagtaatccattgaaatcaataca--tttttgaataccaagagacaatttttaagttgtaaaaaatcttgattgaataccaccagatttt 6902608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 7857338 - 7857236
Alignment:
Q  45 tcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatctat 144  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||| ||| |||||||||||||||||| ||||||  ||| ||| |||| ||||||||    
T  7857338 tcaagaaatctcatgtctttgtatgagattgttagttttaaaaattttaacaaaaaagtctcacaaaatccattctaccaagtaatccattgaaatctat 7857239  T
Q  145 aca 147  Q
    |||    
T  7857238 aca 7857236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 26876470 - 26876311
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    |||||||| || |||||||   |||||| ||||||| ||||||||||||||||| |||||||||||||  ||||||||||| || |||| ||| |||| |    
T  26876470 aaaagtcttaaaaaatctcgaatctttgtatgagattgttagttttaaaattttaaactaaaaagtct--caaaatctattatactaagtaatccattga 26876373  T
Q  138 aatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaata 201  Q
    ||| |||  |        ||||| ||||||| ||||||||||| ||||||||||| ||||||||    
T  26876372 aatatattaa--ttttagaatactaagagacaatttttaagttgtgaaaaatcttgattgaata 26876311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 10571315 - 10571258
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    |||||||| |||| ||||||||||| |  |||||||||||||||||||| | ||||||    
T  10571315 aataccaatagacaatttttaagttgtacaaaatcttaattgaataccaccggatttt 10571258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 27786474 - 27786417
Alignment:
Q  87 attttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatctat 144  Q
    ||||| |||||||||||||||||||||| |||| || ||  ||| |||||||||||||    
T  27786474 atttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctat 27786417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 28594254 - 28594311
Alignment:
Q  87 attttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatctat 144  Q
    ||||| |||||||||||||||||||||| ||| ||| ||  ||| |||||||||||||    
T  28594254 atttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaaatctat 28594311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 5117282 - 5117117
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    |||||||||||||||||| | ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||| |||| |    
T  5117282 aaaagtctcaagaaatcttaagtctttgtatgagattgttagttttaaaatttttaactaaaaagtctcacaaaatccattctactaaggaatccattga 5117183  T
Q  138 aatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    ||||||||||        ||||| ||||||| |||||||||||  |||||||||| || ||||||||    
T  5117182 aatctataca-tttttttaatactaagagacaatttttaagttgcgaaaaatcttgatggaatacca 5117117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 36479354 - 36479401
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacc 203  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||||    
T  36479354 aataccacgagactttttttaagtgatgaaaaatcttaattgaatacc 36479401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 8583885 - 8583933
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||||||||||||||||    
T  8583885 aataccagtagacaatttttaagttatgcaaaatcttaattgaatacca 8583933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 32322174 - 32322127
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacc 203  Q
    |||||||  ||||||||||||||| |||||||||||| ||||||||||    
T  32322174 aataccacaagactatttttaagtgatgaaaaatcttgattgaatacc 32322127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 33450059 - 33450107
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  33450059 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 33450107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 41581911 - 41581959
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    ||||||| |||||| ||||||||||| ||||| |||||| |||||||||    
T  41581911 aataccacgagactttttttaagttaagaaaattcttaactgaatacca 41581959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 54509918 - 54509870
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  54509918 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 54509870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 35165121 - 35165017
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||| ||||||||||| ||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  35165121 agtcttaagaaatctcaagtccttatatgagattgttagttttaaaattttcaactaaaaagtctcacaaaatctattatattaaggaattcattaaaat 35165022  T
Q  141 ctata 145  Q
    |||||    
T  35165021 ctata 35165017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 7497159 - 7497111
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  ||||| ||||||||| |||||||||||| |||||||||||    
T  7497159 aataccacaagactttttttaagtgatgaaaaatcttgattgaatacca 7497111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 29834165 - 29834213
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||| | |||| |||||||||||||| ||||||| ||||||||||||    
T  29834165 aataccgatagacaatttttaagttatgcaaaatctcaattgaatacca 29834213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 29865599 - 29865647
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||| | |||| |||||||||||||| ||||||| ||||||||||||    
T  29865599 aataccgatagacaatttttaagttatgcaaaatctcaattgaatacca 29865647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 9191448 - 9191278
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaat 140  Q
    ||||||||||||||||||||||||| ||||||  |||| ||||| |||||| || |||||| |||||||||||| ||||||  ||| ||| |||| ||||    
T  9191448 agtctcaagaaatctcatgtctttgtatgagaatgttacttttacaattttaaaataaaaaatctcacaaaatccattctaccaagtaatccattgaaat 9191349  T
Q  141 ctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    | |||||        ||||||||||||| ||||||||||| | | ||||||| ||||||||||| ||||||||    
T  9191348 caataca--tttttgaataccaagagacaatttttaagttgtaataaatcttgattgaataccaccagatttt 9191278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 49459916 - 49460019
Alignment:
Q  43 tctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatct 142  Q
    |||||| | |||||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| |||| ||||||    
T  49459916 tctcaacatatctcaggtctttatatgagattgctagttttaaaattttcaactaaaaagtctcacaaaatccattatatcaagtaatccattgaaatct 49460015  T
Q  143 atac 146  Q
    ||||    
T  49460016 atac 49460019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 1928284 - 1928332
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  1928284 aataccaatagacaatttttaagttgtgcaaaatctgaattgaatacca 1928332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 26882706 - 26882754
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  26882706 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 26882754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 36402451 - 36402403
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  36402451 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 36402403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 45318664 - 45318616
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  45318664 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 45318616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 52705597 - 52705549
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  52705597 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 52705549  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 6783864 - 6784029
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaag-aaattcatta 136  Q
    |||||||| |||||||||||| |||||| ||||||| |||| |||| || |||||||||||||||| |||||||||| ||||||||||| | || ||||     
T  6783864 aaaagtcttaagaaatctcatatctttgtatgagattgttaattttgaatttttcaactaaaaagtttcacaaaatccattctattaagtatatccattg 6783963  T
Q  137 aaatctatacannnnnnnnaataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||||||        |||| |||||||| ||||||||||| || |||||||| || ||||||||    
T  6783964 aaatctataca--tttttgaatatcaagagacaatttttaagttgtggaaaatcttgatggaatacca 6784029  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 43151475 - 43151403
Alignment:
Q  41 agtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaat 113  Q
    ||||||| ||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||    
T  43151475 agtctcatgaaatctcatgtctttgtacaagattgttagttttaaaattttcaactaaaaagtctcacaaaat 43151403  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 25712271 - 25712375
Alignment:
Q  38 aaaagtctcaagaaatctcatgtctttgcatgagatcgttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaa 137  Q
    |||||||| | ||||| ||| || ||||  |||||| |||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||| |||| |    
T  25712271 aaaagtcttacgaaatatcaggtatttgtgtgagattgttagttttaaaattttcaactaaaaagtctcacaaaatccattctaccaagtaatccattga 25712370  T
Q  138 aatct 142  Q
    |||||    
T  25712371 aatct 25712375  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 24574647 - 24574718
Alignment:
Q  76 ttagttttaaaattttcaactaaaaagtctcacaaaatctattctattaagaaattcattaaaatctataca 147  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||  ||| ||| |||| |||||||||||    
T  24574647 ttagttttaaaattttcacctaaaaagtctcacaaaatccattatagcaagtaatccattgaaatctataca 24574718  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 12103712 - 12103665
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacc 203  Q
    ||||||| |||||| ||||||||| |||||||||||| ||||||||||    
T  12103712 aataccatgagactttttttaagtgatgaaaaatcttgattgaatacc 12103665  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 25713324 - 25713375
Alignment:
Q  162 aagagactatttttaagttatgaaaaatcttaattgaataccatcagatttt 213  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||| | ||||||    
T  25713324 aagagacaatttttaagttgtgaaaaatcttgattgaataccaacggatttt 25713375  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 44276472 - 44276425
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacc 203  Q
    ||||||| |||||| ||||||||| |||||||||||| ||||||||||    
T  44276472 aataccatgagactttttttaagtgatgaaaaatcttgattgaatacc 44276425  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 19552028 - 19552076
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| |||||||||||| |||||||    
T  19552028 aataccactagacaatttttaagttatgcaaaatcttaattaaatacca 19552076  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 26005863 - 26005911
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  26005863 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 26005911  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 35731136 - 35731088
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  35731136 aataccagtagacaatttttaagttatgcaaaatctcaattgaatacca 35731088  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 39338177 - 39338225
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||| |||| ||||||||||| || ||||||| ||||||||||||    
T  39338177 aataccaatagacaatttttaagttgtgcaaaatctcaattgaatacca 39338225  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 46252083 - 46252131
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  46252083 aataccagcagacaatttttaagttatgcaaaatctcaattgaatacca 46252131  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 81662 - 81710
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||    
T  81662 aataccaggagacaatttttaagttatgcaaaatctcaattgaatacca 81710  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 21293 - 21341
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    |||||| | |||| |||||||||||||| ||||||| ||||||||||||    
T  21293 aataccgatagacaatttttaagttatgcaaaatctcaattgaatacca 21341  T

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Target: scaffold0202 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 16422 - 16470
Alignment:
Q  156 aataccaagagactatttttaagttatgaaaaatcttaattgaatacca 204  Q
    ||||| || |||| |||||||||||||| ||||||| ||||||||||||    
T  16422 aatactaatagacaatttttaagttatgcaaaatctcaattgaatacca 16470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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