View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_high_13 (Length: 606)
Name: NF3002_high_13
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_13 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 15171991 - 15171663
Alignment:
| Q |
16 |
tgttgatcatcaattacactatattacctttttataaagaataaaaataaaaattgctctatgtaacttacagtgctataacaccagcacagcactccat |
115 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171991 |
tgttaatcatcaattacactatgttacctttttataaagaataaaaataaaaattgctct--gtaacttacagtgctataacaccagcacagcactccat |
15171894 |
T |
|
| Q |
116 |
agtttaagttttaacttcgatcgtttcagtagcatattgtagcaaatacaaacttatactatccaataaactccataaaacatagtcatagagatcttca |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171893 |
agtttaagtttgaacttcgatcgtttcagtagcatattgtagcaaatacaaacttatactatccaataaactccataaaacatagtcatagagatcttca |
15171794 |
T |
|
| Q |
216 |
actttgtaacaagatagcagaaaacagagattacatagcataacaaaagattgaggattgaaggtttttattgaaatacacgagtgcctaacagtagttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15171793 |
actttgtaacaagatagcagaaaacagagattacatagcataacaaaagattgaggattgaaggtttttattgaaatacacgagtgcctaacagtagttc |
15171694 |
T |
|
| Q |
316 |
ttattataatcaatacagctacatcagtgct |
346 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |
|
|
| T |
15171693 |
ttattctaatcaatacagcctcatcagtgct |
15171663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 345 - 606
Target Start/End: Original strand, 17793044 - 17793305
Alignment:
| Q |
345 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagtt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793044 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagtt |
17793143 |
T |
|
| Q |
445 |
ttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793144 |
ttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
17793243 |
T |
|
| Q |
545 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17793244 |
tacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagc |
17793305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 17797343 - 17797603
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797343 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
17797442 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797443 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
17797542 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17797543 |
acttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagc |
17797603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 92 - 346
Target Start/End: Complemental strand, 7500697 - 7500442
Alignment:
| Q |
92 |
tataacaccagcacagcactccatagtttaagttttaacttcgatcgtttcagtagcatattgtagcaaatacaaacttatactatccaataaactccat |
191 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7500697 |
tataacaccagcacagcaccccgtagtttaagttttaacttcgatcgtttcagcagcacattgtagcaaatacaaacttatactatccaataaactccat |
7500598 |
T |
|
| Q |
192 |
aaaacatagtcatagagatcttcaactttgtaacaagatagcagaaaacagagattacatagcataac-aaaagattgaggattgaaggtttttattgaa |
290 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||| || |
|
|
| T |
7500597 |
aaaacttagtcat--agatcttcaactttgttacaagctagcagaaaacagagattacatagcataacaaaaagattgaaggttgaaggttcttattaaa |
7500500 |
T |
|
| Q |
291 |
atacac--gagtgcctaacagtagttcttattataatcaatacagctacatcagtgct |
346 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
7500499 |
atacacatgagtgcctaacagtagttcttattctaattaatacagctacattagtgct |
7500442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 26404854 - 26405114
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26404854 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
26404953 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26404954 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt |
26405053 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405054 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
26405114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 345 - 606
Target Start/End: Original strand, 26400555 - 26400816
Alignment:
| Q |
345 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagtt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400555 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagtt |
26400654 |
T |
|
| Q |
445 |
ttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26400655 |
ttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
26400754 |
T |
|
| Q |
545 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400755 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
26400816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 345 - 606
Target Start/End: Original strand, 28914198 - 28914459
Alignment:
| Q |
345 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagtt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914198 |
ctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagtt |
28914297 |
T |
|
| Q |
445 |
ttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28914298 |
ttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg |
28914397 |
T |
|
| Q |
545 |
tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28914398 |
tacttttctatttgtacgtttgaattgaataagaattttactcttcttccacttgttctagc |
28914459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 7033625 - 7033885
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033625 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7033724 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7033725 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt |
7033824 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7033825 |
acttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagc |
7033885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 7037925 - 7038185
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7037925 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
7038024 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7038025 |
tatttcctccttgttttcagcaatcagtttaattctagtattctattgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt |
7038124 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038125 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
7038185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 1545221 - 1545481
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1545221 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
1545320 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1545321 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt |
1545420 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1545421 |
acttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagc |
1545481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 346 - 606
Target Start/End: Original strand, 1540923 - 1541183
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1540923 |
tgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagttt |
1541022 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1541023 |
tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt |
1541122 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541123 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
1541183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 346 - 606
Target Start/End: Complemental strand, 30506126 - 30505868
Alignment:
| Q |
346 |
tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt |
445 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
30506126 |
tgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtt-tcctagtttctagttcagttt |
30506028 |
T |
|
| Q |
446 |
tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt |
545 |
Q |
| |
|
||||||||| ||||||||||| || ||| | ||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
30506027 |
cttttcctcctagttttcagcaagcatttttttt-tagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctgt |
30505929 |
T |
|
| Q |
546 |
acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
30505928 |
acttttctatttgtacgtttgaattgaatgaaaaacatactcttcttccacttgttctagc |
30505868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University