View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_131 (Length: 227)
Name: NF3002_high_131
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_131 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51938228 - 51938007
Alignment:
| Q |
1 |
catgtggcatatgacagatccattttgcttgtatcataaaaggcatatatgtatgctgtattagttttcaaacaagtcaaatgaggaagacaataatttc |
100 |
Q |
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| T |
51938228 |
catgtggcatataacagatccattttgcttgtatcataagaggcatatatgtatgctgtatcagttttcaaacaagtcaaatgaggaagacaacaatttc |
51938129 |
T |
|
| Q |
101 |
agcgttcaagcagtatccacttataaacacaagttttcactggttgatatatattgttgtaatttagtttcttttactaatcattcatttttcttctatt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51938128 |
agctttcaagcagtatccacttataaacacaagttttcactggttgatatatatagttgtaatttagtttcttttactaatcattcatttttcttctatt |
51938029 |
T |
|
| Q |
201 |
tttaatccaaaccttacacctt |
222 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
51938028 |
tttaatccaaactttacacctt |
51938007 |
T |
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