View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_132 (Length: 223)
Name: NF3002_high_132
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_132 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 45959682 - 45959866
Alignment:
| Q |
18 |
ctcaattccatggaaatgtttttactttgttagcttctttaacataccttatcctattcttggtcactttaaaccgtagtctatttagtagaaaacacca |
117 |
Q |
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| T |
45959682 |
ctcaattctatggaaatgtttttactttgttagcttctttaacataccttatcctcttcttggtcactttaaattgtagtcgatttagtagaaaacacca |
45959781 |
T |
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| Q |
118 |
taagctattcgagtgtcgattttgtaaagaagttgtgattataaaggtaaaagaagttaaaatatattcatgaaacatagtgcttac |
204 |
Q |
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| T |
45959782 |
taagctattcgagtgtcga--ttgtaaagaagttgtgattataaaggtaaaagaagttaaaatatattcatgaaacatagtgcttac |
45959866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 45959524 - 45959676
Alignment:
| Q |
18 |
ctcaattccatggaaatgtttttactttgttagcttctttaacataccttatcctattcttggtcactttaaaccgtagtctatttagtagaaaacacca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
45959524 |
ctcaattccatggaaatgtttttactttgttagcttctttaacataccttatcttcttcttggtcactttaaactgtagtcgatttagtagaaaacacca |
45959623 |
T |
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| Q |
118 |
taagctattcgagtgtcgattttgtaaagaagttgtgattataaaggtaaaagaa |
172 |
Q |
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| T |
45959624 |
taagctattcgagtgtcga--ttgtaaagaagttgtgattataaaggtaaaagaa |
45959676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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