View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_138 (Length: 208)
Name: NF3002_high_138
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_138 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 3055021 - 3055228
Alignment:
| Q |
1 |
tagtagctgcaactaattcactatattcaaatcttctaggtattgttgctttatccaaatcaaatttcttcggaaatggtataccatattcatcaagccc |
100 |
Q |
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| T |
3055021 |
tagtagctgcaactaattcactatattcaaatcttctaggtattgttgctttatccaaatcaaatttcttcggaaatggtataccatattcatcaagccc |
3055120 |
T |
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| Q |
101 |
ttcatcacaattcttccttttcctcttcactatcacccaaccaacaatactggctatcaaaaataccaaaataaccggaacaatcacagaaacgacaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3055121 |
ttcatcacaattcttccttttcctcttcactatcacccaaccaacaatactggctatcaaaaataccaaaataaccggaacaatcacagcaacgacaaca |
3055220 |
T |
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| Q |
201 |
ataaccgt |
208 |
Q |
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|||||||| |
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| T |
3055221 |
ataaccgt |
3055228 |
T |
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