View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_15 (Length: 569)
Name: NF3002_high_15
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 555
Target Start/End: Original strand, 4082476 - 4083019
Alignment:
| Q |
12 |
caaagggatacaattgagagtaaacaagtgaatcacccttccctacatttgtgtattttccactctcttttccataccacacttcacttccaatagatgc |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
4082476 |
caaatggatacaattgagagtaaacaagtgaatcacctttccctacatttgtgtattttccactcttttttccataccacacctcacttccaatagatgc |
4082575 |
T |
|
| Q |
112 |
aggatcaagtggggtcacatttagacctatctgtgatttcccttatccaaacaaaccaattaataatttaatgctttagaagttagaacacattaaacat |
211 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| || |
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| T |
4082576 |
aggatcaagtggggtcacatttagaccaatctgtgatttcccttatccaaacaaaccaattaatattttaatgctttagaagttagaacaaaataaa-at |
4082674 |
T |
|
| Q |
212 |
aaaaaatttaatatttgtattcaacttttcaaggatttt-taattagatccttaaactaaaaaagttggtgattaaactttttcttgtggaaacaaaatt |
310 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
4082675 |
taaaaatacaatatttgtattcaacttttcaaggattttttaattagatccttaaactaaaaaagttggtgattaaactttttcatgtggaaacagaatt |
4082774 |
T |
|
| Q |
311 |
gaggagaaaaattagtcattaccagtaacccaagaaatccacatagaagtaggtgaagaaatagcgagagcgatttgttcaggaaaatttaaagtgacat |
410 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
4082775 |
gaggagaaaaagtagtcattaccagtaatccaagaaatccacatagaagttggtgaagaaatagcgagagcgatttgttcaggaaaatttaaagtaacgt |
4082874 |
T |
|
| Q |
411 |
tcattttgagccttggatgagtcataggcaagtcatcactgccccttcgcagtgatgaatcaaaccgacgagtcaccggtttaaacgggccatcaagggt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4082875 |
tcattttgagccttggatgagtcataggcaagtcatcactgcctcttcgcagtgatgagtcaaaccgacgagtcaccggtttaaacggaccatcaagggt |
4082974 |
T |
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| Q |
511 |
ggtcggaatgtgtctcttactcaccaccatgttgatgtttgtgat |
555 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4082975 |
ggtcggaatgtgtctcttactcaccaccatattgatgtttgtgat |
4083019 |
T |
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