View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_21 (Length: 531)
Name: NF3002_high_21
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 36908400 - 36908686
Alignment:
| Q |
1 |
acgaggtagtactccacatatgatagtataggaaaatataacaatagatcaaataattatgaaaatttaaaaggattctaaagacaattttgcagtaatg |
100 |
Q |
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| T |
36908400 |
acgaggtagtactccacatatgatagtataggaaaatataacaatagatcaaataattatgaatatttaaaaggattctaaagacaattttgcag----- |
36908494 |
T |
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| Q |
101 |
cagagagtaatgggatgtaacaaaaatggataatattgtattagaagatttatacaaccaaaattgtgagttgagagaggtaggaatgcaatgcaagaaa |
200 |
Q |
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| T |
36908495 |
---agagtaatgggatgtaacaaaaatggataat------------------tacaaccaaaattgtgagttgagagaggtaggaatgcaatgcaagaaa |
36908573 |
T |
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| Q |
201 |
aagttaaagattgtttggtttggttgatgaaggaatctgtatctgtggctatttgggtgcgagggtcctactaaaaaattggcaacaatgtaagtgacag |
300 |
Q |
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| T |
36908574 |
aagttaaagattgtttggtttggttgatgaaggaatctgtatctgtggctatttgggtgcgagggtcctactaaaaaattggcaacaatgtaagtgacag |
36908673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 332 - 519
Target Start/End: Original strand, 36908717 - 36908904
Alignment:
| Q |
332 |
cattcatttattattgttttctgcaaacaaagattaaagtcaagtcacacatctatctagctatctttctttgtttccaacaagatccaagtcacacatg |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36908717 |
cattcatttattattgttttctgcaaacaaagattaaagtcaagtcacacatctatctagctatctttctttgtttccaacaagatccaagtcacacatg |
36908816 |
T |
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| Q |
432 |
caccccacctacttaactgatttgacgtttcagattctctacttttaacgttttcctatcttacaatttcttccactgctgtcatctc |
519 |
Q |
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| T |
36908817 |
caccccacctacttaactgatttgacgtttcagattctctacttttaacgttttcctatcttacaatttcttccactgctgtcatctc |
36908904 |
T |
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