View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_23 (Length: 518)
Name: NF3002_high_23
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 8341659 - 8341297
Alignment:
| Q |
11 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaatttagcaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8341659 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcgtatattcagtagcgtagtgttcaataagatgcaacttctgatttagcaa |
8341560 |
T |
|
| Q |
111 |
caaagtttaatagaccaatttaagcttggattaaatgaaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaa |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8341559 |
caaagtttaatagaccaaattaagcttggattaaatgaaaccttgtcattctgaattatgagaggttggagcaagggacatttctgaatcaagtggagaa |
8341460 |
T |
|
| Q |
211 |
gagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgttt |
310 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8341459 |
gagaatttgagttaaaccaggaaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgttt |
8341360 |
T |
|
| Q |
311 |
gtacacgatatcaagtagtaattagtacaaaacaatctctatctatctatatatatgaatata |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||||||| | |||| |||||| |
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| T |
8341359 |
gtacacgatatcaagtagtaattagtacaaaactatatctatctatctacaaatataaatata |
8341297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 148 - 361
Target Start/End: Complemental strand, 17478469 - 17478256
Alignment:
| Q |
148 |
aaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaag |
247 |
Q |
| |
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|||||||||| ||||||||||| ||| |||| |||| ||||||||||||| |||| ||| |||||||| |||||||||||| |||||| |||||| || |
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| T |
17478469 |
aaaccttgtcgttctgaattataagaacttgcagcatcggacatttctgaagcaagctgagcagagaattggagttaaaccagagaagaatgagctctag |
17478370 |
T |
|
| Q |
248 |
gcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaacaatc |
347 |
Q |
| |
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|| |||||||| ||||||||||||||||| | | ||||||||||| ||||||||||||||||||| || | ||| || |||||||||||||| || |
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| T |
17478369 |
acgtatcaaatagtgaaattcttgaaaaagtagattgtggggttcaccaagcagccactgtttgtacaagacaccaactactaattagtacaaaaatata |
17478270 |
T |
|
| Q |
348 |
tctatctatctata |
361 |
Q |
| |
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||||||||| |||| |
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|
| T |
17478269 |
tctatctatatata |
17478256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 120 - 352
Target Start/End: Original strand, 32849170 - 32849402
Alignment:
| Q |
120 |
atagaccaatttaagcttggattaaatgaaaccttgtcattctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttg |
219 |
Q |
| |
|
|||||||| ||||| |||||||||| || |||||| || ||||| |||||| |||| |||| ||||||| |||| ||||| ||| ||| |||| |
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| T |
32849170 |
atagaccagattaaggttggattaaactaa-ccttgttcttttgaatcatgagaacttgaagcataggacattcttgaagcaagttgagcagataattga |
32849268 |
T |
|
| Q |
220 |
agttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtac-acga |
318 |
Q |
| |
|
| ||||||||||||||| |||||| ||||||| ||||| |||||||||||||| | | |||||||||||| | |||||||||||||||||| | | |
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|
| T |
32849269 |
atctaaaccagggaagaatgagctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaagcagccactgtttgtactagaa |
32849368 |
T |
|
| Q |
319 |
tatcaagtagtaattagtacaaaacaatctctat |
352 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |
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| T |
32849369 |
catcaagtagtaattagtacaaaactatatctat |
32849402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 343
Target Start/End: Complemental strand, 4442155 - 4441971
Alignment:
| Q |
159 |
ttctgaattatgagagcttggagcaagggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaat |
258 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||| |||| |||| || ||| |||| ||||||||||||||||||| |||||| | ||| ||||| |
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|
| T |
4442155 |
ttctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagataattggagttaaaccagggaagaatgagctctaaatgaagcaaat |
4442056 |
T |
|
| Q |
259 |
attgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaac |
343 |
Q |
| |
|
| ||||||||||||||| | ||| | |||||||| ||||||||||||| || ||| |||||||||| |||||||||||||| |
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| T |
4442055 |
agcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagcaattagtacaaaac |
4441971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 17478637 - 17478544
Alignment:
| Q |
11 |
caaagggcatgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaatt |
104 |
Q |
| |
|
|||||| | ||||||||||||||||||| || ||||||||||||||||| ||||||| ||| | ||| ||| ||||||||| ||||||||||| |
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| T |
17478637 |
caaaggacttgaataagatgcaatattcatagtaatgaattaatcatgttatatattaagtggtgtattgtgcaataagataaaacttctaatt |
17478544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 4427376 - 4427440
Alignment:
| Q |
282 |
tcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaacaat |
346 |
Q |
| |
|
|||||||| || || |||||||||| |||| ||| || ||||| ||||||||||||||||||||| |
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| T |
4427376 |
tcatggggctctccaagcagccactatttgaacatgacatcaaatagtaattagtacaaaacaat |
4427440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 512
Target Start/End: Complemental strand, 8574244 - 8574214
Alignment:
| Q |
482 |
cataatacaactcatgttaagacattaaaag |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
8574244 |
cataatacaactcatgttaagacattaaaag |
8574214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 24951964 - 24952013
Alignment:
| Q |
149 |
aaccttgtcattctgaattatgagagcttggagcaagggacatttctgaa |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || | ||||||||||||| |
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|
| T |
24951964 |
aaccttgtcattatgaattatgagagcttgaagtataggacatttctgaa |
24952013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 8366420 - 8366506
Alignment:
| Q |
20 |
tgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaattta |
106 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| || |||||||| | ||| ||||||||||||||| |||||||||||| |
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| T |
8366420 |
tgaataagatgcaatattcataggaatgaattaatcatgttatttattcagtggtgtactgttcaataagatgctacttctaattta |
8366506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 8382421 - 8382505
Alignment:
| Q |
20 |
tgaataagatgcaatattcttaataatgaattaatcatgtcatatattcagtagcgtagtgttcaataagatgcaacttctaattta |
106 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| ||||||| ||| | ||| ||||||||||||||| |||||||||||| |
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|
| T |
8382421 |
tgaataagatgcaatattcat--taatgaattaatcatgttatatattaagtggtgtactgttcaataagatgctacttctaattta |
8382505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 365
Target Start/End: Original strand, 8382618 - 8382797
Alignment:
| Q |
186 |
ggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcat |
285 |
Q |
| |
|
|||||||| |||| |||| ||| |||||||| ||| |||||||||||||| ||| || | ||| ||||| ||||||||||||||| | ||| |
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|
| T |
8382618 |
ggacatttgtgaagcaagctgaggagagaattggagctaaaccagggaagagtgagatctaaatgaagcaaattgcaaaattcttgaaaaagtagatcac |
8382717 |
T |
|
| Q |
286 |
ggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaacaatctctatctatctatatata |
365 |
Q |
| |
|
|||||||||| ||||||||||||| || | | | ||||||| ||||||||||||||| || | ||||||| || ||||| |
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|
| T |
8382718 |
ggggttcaccaagcagccactgttcgtccgcattgtcaagtattaattagtacaaaaccatatatatctatatagatata |
8382797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 8366615 - 8366772
Alignment:
| Q |
186 |
ggacatttctgaatcaagtggagaagagaatttgagttaaaccagggaagaacgagctcaaggcgaatcaaatattgaaattcttgaaaaagcatctcat |
285 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| |||| |||||||||||||| || || | ||| || ||| ||| ||||||||||| | ||| |
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|
| T |
8366615 |
ggacatttgtgaagcaagctgagaagagaattggagtcaaaccagggaagaatgatatctaaatgaagcagatagcaaaaatcttgaaaaagtagatcac |
8366714 |
T |
|
| Q |
286 |
ggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaac |
343 |
Q |
| |
|
|||||||||| ||||||||||||| || | | | ||||||| ||||||||||||||| |
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|
| T |
8366715 |
ggggttcaccaagcagccactgttcgtccgcattgtcaagtattaattagtacaaaac |
8366772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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