View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_24 (Length: 514)
Name: NF3002_high_24
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 2513561 - 2513178
Alignment:
| Q |
15 |
atgaatgcgtcaagttatgatgttttcatgggatgaatgagtgtttactttgttttgtattgttacaatggggttagccatcatggaaggaatagacata |
114 |
Q |
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| T |
2513561 |
atgaatgcgtcaagttatgatgttttcatgggatgaatgagagtttactttgtttagtattgttacaatggggttagccatcatggaaggaatagacata |
2513462 |
T |
|
| Q |
115 |
ttgtgtgagagagttggttgtctggatgtttggtcctaaatttatatttttctattttcttctcttgttcattagctttggtttcaaggagattcaatat |
214 |
Q |
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| T |
2513461 |
ttgtgtgagagagttggttgtctggctgtttggtcctaaatttatatttttctattttcttctcttgttcattagctttggtttcaaggagattcaatat |
2513362 |
T |
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| Q |
215 |
taaaccagtcttatagttatctggaactgatcgcttaatgtgtttgtatgctctacagctatttgtgtgtataatctactcaacgtttgtagtttttatg |
314 |
Q |
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| T |
2513361 |
taaaccagtcttatagttatctggaactgatcgcttaatgtgtttgtatgctctacagctatttgtgtgtataatctactcaacgtttgtagtttttatg |
2513262 |
T |
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| Q |
315 |
tgcaattttatgtttattttctgagtatacatta--cgttttcagaatgaatcttagtatatagcatgcaactaagcttatgaa |
396 |
Q |
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| T |
2513261 |
tgcaattttatgtttattttctgagtatacattatgcgttttcagaatgaatcttagtatatagtatgcaactaagcttatgaa |
2513178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 2513119 - 2513060
Alignment:
| Q |
455 |
ctctgaaaacaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctc |
514 |
Q |
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| T |
2513119 |
ctctgaaaacaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctc |
2513060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 2506916 - 2506760
Alignment:
| Q |
29 |
ttatgatgttttcatgggatgaatgagtgtttactttgttttgtattgttacaatggggttagccatcatggaaggaatagacatattgtgtgagagagt |
128 |
Q |
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| T |
2506916 |
ttatgatgttttcgtgtgatgaatgagtctttactctgtttagtatcgttgcagacgggttagccatca-ggatagaa---acctattgtgtgatagatt |
2506821 |
T |
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| Q |
129 |
tggttgtctg----gatgtttggtcctaaatttatatttttctattttcttctcttgttca |
185 |
Q |
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| T |
2506820 |
tggttgtctgtttggctgtttggtcctaaattaatatttttcaattgtcttctcttgttca |
2506760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 1458972 - 1459023
Alignment:
| Q |
463 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctc |
514 |
Q |
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| T |
1458972 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctc |
1459023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 2428679 - 2428730
Alignment:
| Q |
463 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctc |
514 |
Q |
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| T |
2428679 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctc |
2428730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 2517471 - 2517420
Alignment:
| Q |
463 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctc |
514 |
Q |
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| T |
2517471 |
acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctc |
2517420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 2506497 - 2506451
Alignment:
| Q |
464 |
caggtatgccaggaatgactgcttattctggtttctttgaagtaggc |
510 |
Q |
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| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggc |
2506451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 2497776 - 2497724
Alignment:
| Q |
458 |
tgaaaacaggtatgccaggaatgactgcttattctggtttctttgaagtaggc |
510 |
Q |
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| T |
2497776 |
tgaacacaggtatgccaggaataactgcttatgctggtttctttgaactaggc |
2497724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 2435046 - 2435093
Alignment:
| Q |
463 |
acaggtatgccaggaatgactgcttattctggtttctttgaagtaggc |
510 |
Q |
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| T |
2435046 |
acaggtatgccgggaatgactgcatatgctggtttctttgaattaggc |
2435093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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