View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_high_28 (Length: 465)

Name: NF3002_high_28
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_high_28
NF3002_high_28
[»] chr4 (7 HSPs)
chr4 (21-455)||(29114573-29115014)
chr4 (265-330)||(49138933-49138998)
chr4 (263-328)||(41058850-41058915)
chr4 (222-272)||(39386675-39386725)
chr4 (287-329)||(55085122-55085164)
chr4 (290-330)||(2635085-2635125)
chr4 (224-272)||(26911802-26911850)
[»] chr3 (6 HSPs)
chr3 (199-274)||(32523310-32523385)
chr3 (279-330)||(12674935-12674986)
chr3 (154-197)||(29252120-29252163)
chr3 (156-197)||(14651099-14651140)
chr3 (290-330)||(3845235-3845275)
chr3 (263-327)||(48410908-48410972)
[»] scaffold0168 (1 HSPs)
scaffold0168 (265-330)||(31748-31813)
[»] chr5 (7 HSPs)
chr5 (263-330)||(29922816-29922883)
chr5 (284-328)||(16293999-16294043)
chr5 (263-327)||(22226332-22226396)
chr5 (225-272)||(27374290-27374337)
chr5 (263-320)||(14299262-14299319)
chr5 (290-330)||(3043127-3043167)
chr5 (224-272)||(42858150-42858198)
[»] chr1 (4 HSPs)
chr1 (200-272)||(30850372-30850442)
chr1 (263-330)||(28083984-28084051)
chr1 (228-272)||(7524155-7524199)
chr1 (262-330)||(47892483-47892551)
[»] chr6 (10 HSPs)
chr6 (262-330)||(7262993-7263061)
chr6 (290-330)||(5724753-5724793)
chr6 (224-272)||(17225894-17225942)
chr6 (263-330)||(2234437-2234504)
chr6 (228-275)||(26280644-26280691)
chr6 (263-330)||(29240548-29240615)
chr6 (224-274)||(882726-882776)
chr6 (265-330)||(25195462-25195527)
chr6 (224-272)||(852574-852622)
chr6 (199-272)||(6653856-6653925)
[»] chr7 (4 HSPs)
chr7 (224-272)||(40491620-40491668)
chr7 (265-330)||(17111797-17111862)
chr7 (285-330)||(38123766-38123811)
chr7 (285-330)||(45004907-45004952)
[»] chr2 (6 HSPs)
chr2 (285-330)||(40582671-40582716)
chr2 (290-330)||(30503131-30503171)
chr2 (290-330)||(4778475-4778515)
chr2 (290-330)||(11759943-11759983)
chr2 (290-330)||(16013834-16013874)
chr2 (222-274)||(32596031-32596083)
[»] chr8 (4 HSPs)
chr8 (263-315)||(7602202-7602254)
chr8 (199-272)||(13384624-13384697)
chr8 (224-272)||(32927934-32927982)
chr8 (290-330)||(35495182-35495222)


Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 455
Target Start/End: Complemental strand, 29115014 - 29114573
Alignment:
Q  21 aaaagggataatgtgggtgagaaggaaaagggataatgtgagtgagaaaattgagatatgaaaataaatggttgtattttagaatacaactacactttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29115014 aaaagggataatgtgggtgagaaggaaaagggataatgtgagtgagaaaattgagatatgaaaataaatggttgtattttagaatacaactacactttta 29114915  T
Q  121 agctatttcctttgtttatgtttggttctgagataaaaattgattttgattgtattgattatgattaaaagtgagttc--------gtgatttgtatttg 212  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||| ||||    
T  29114914 agctatttcctttgtgtatgtttggttctgagataaaaattgattttgattgtattgattatgattaaaagtgagttgaaggtatggtaatttgtgtttg 29114815  T
Q  213 gatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29114814 gatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctaca 29114715  T
Q  313 cttctagaatcaattttgtcacccatagattatttgatttctttccacttgactacaatagcttagatagcggtgggaattttggggtattcctcgtata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29114714 cttctagaatcaattttgtcacccatagattatttgatttctttccacttgactacaatagcttagatagcggtgggaattttggggtattcctcgtata 29114615  T
Q  413 cttacattagatttacaacagcatttacatttctatacctttg 455  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  29114614 c-tacattagatttacaacagcatttacatttctatacctttg 29114573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 49138933 - 49138998
Alignment:
Q  265 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| || |||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 49138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 41058915 - 41058850
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattt 328  Q
    |||||||||||| |||||||||| || ||||||| | |||||||||||| | | ||||||||||||    
T  41058915 aaaatcaattttactcgaaaacatccaaacatgtcacaatcaattctactcctttagaatcaattt 41058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 39386725 - 39386675
Alignment:
Q  222 atattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||||||||||| ||||||| || ||| ||| ||||||||||    
T  39386725 atattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaatt 39386675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 55085122 - 55085164
Alignment:
Q  287 cctaacatgttagaatcaattctacacttctagaatcaatttt 329  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  55085122 cctaacatgttaaaatcaattctatacctctagaatcaatttt 55085164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 2635125 - 2635085
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  2635125 aacatgtcaaaatcaattttacacttctagaatcaattttg 2635085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 26911802 - 26911850
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    |||||||||||||||| ||||||| || ||||||||||  |||||||||    
T  26911802 attcatgtaaaagtgaattaaactataaatttgtatgtggaaatcaatt 26911850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 32523310 - 32523385
Alignment:
Q  199 gtgatttgtatttggatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 274  Q
    ||||||||| ||||||| ||||||| |||||||| |||||||||||||| || |||||| ||||||||||||||||    
T  32523310 gtgatttgtgtttggatgcattcatgttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaatttt 32523385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 12674986 - 12674935
Alignment:
Q  279 gaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  12674986 gaaaacaaccaaacatgttaggatcaattctacacctccagaatcaattttg 12674935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 29252120 - 29252163
Alignment:
Q  154 taaaaattgattttgattgtattgattatgattaaaagtgagtt 197  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||    
T  29252120 taaaaattgattttgattgaattgattttgatcaaaagtgagtt 29252163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 14651099 - 14651140
Alignment:
Q  156 aaaattgattttgattgtattgattatgattaaaagtgagtt 197  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  14651099 aaaattgattttgatagaattgattttgattaaaagtgagtt 14651140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 3845235 - 3845275
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  3845235 aacatgtcaaaatcaattctacacctctagaatcaattttg 3845275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 48410908 - 48410972
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaatt 327  Q
    |||||||||| | ||||||| ||| | ||||| | ||||||||||| |||||| |||||||||||    
T  48410908 aaaatcaattctactcgaaagcaatcaaacatctcagaatcaattccacacttatagaatcaatt 48410972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 31813 - 31748
Alignment:
Q  265 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  31813 aatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 31748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 29922883 - 29922816
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| ||||||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  29922883 aaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattttg 29922816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 16293999 - 16294043
Alignment:
Q  284 caacctaacatgttagaatcaattctacacttctagaatcaattt 328  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||    
T  16293999 caaccaaacatgttaaaatcaattctacacttctataatcaattt 16294043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 22226332 - 22226396
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaatt 327  Q
    ||||||||||||  |||| ||||||| ||||||| |||||||||||||||| || | ||||||||    
T  22226332 aaaatcaattttagtcgacaacaaccaaacatgtcagaatcaattctacacgtccaaaatcaatt 22226396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 27374290 - 27374337
Alignment:
Q  225 ttcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    |||||||||| |||||||||||  || |||||||||||||||||||||    
T  27374290 ttcatgtaaatgtgagttaaaccgtaaatttgtatgtaaaaatcaatt 27374337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 14299319 - 14299262
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctaga 320  Q
    ||||||||||||  |||||||||||| || |||  |||||||||||||||| ||||||    
T  14299319 aaaatcaattttattcgaaaacaaccaaatatgccagaatcaattctacacctctaga 14299262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 3043127 - 3043167
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  3043127 aacatgtcaaaatcaattctacacctctagaatcaattttg 3043167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 42858198 - 42858150
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||||||||| |||| || |||||| ||| ||||||||||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 42858150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 30850372 - 30850442
Alignment:
Q  200 tgatttgtatttggatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||| ||||||||||  ||||||||||||||||| |||| || |||||||||| ||||||||||    
T  30850372 tgatttgtatttgaatacattcat--tcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaatt 30850442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 28083984 - 28084051
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| | ||||||||||||| || |||| ||||||||||||||||| | ||| |||||||||    
T  28083984 aaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattctacactaccagagtcaattttg 28084051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 7524199 - 7524155
Alignment:
Q  228 atgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||    
T  7524199 atgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaatt 7524155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 47892483 - 47892551
Alignment:
Q  262 aaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||||||| | ||| ||| ||||| ||||||   |||||||||||||||||| | |||||||||||    
T  47892483 aaaaatcaattctactcaaaagcaaccaaacatgacggaatcaattctacacttccataatcaattttg 47892551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 7263061 - 7262993
Alignment:
Q  262 aaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||||||| | ||||| |||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  7263061 aaaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttg 7262993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 5724753 - 5724793
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  5724753 aacatgtcagaatcaattctacacttctagaattaattttg 5724793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 17225942 - 17225894
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    |||||||||||| |||||| |||| || |||||||||||||||||||||    
T  17225942 attcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaatt 17225894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 2234504 - 2234437
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| | |||||||  || | |||||||| |||||| |||||||||| ||||||||||||||    
T  2234504 aaaatcaattctactcgaaagtaatcgaacatgtttgaatcagttctacacttatagaatcaattttg 2234437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 26280691 - 26280644
Alignment:
Q  228 atgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttg 275  Q
    ||||||||||||||| |||| || ||||||| ||||||||||||||||    
T  26280691 atgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttg 26280644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 29240548 - 29240615
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||| | || ||||| | |||||||||| | |||||||| ||||| ||||||||||||||||    
T  29240548 aaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacctctagaatcaattttg 29240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 882776 - 882726
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 274  Q
    ||||||| |||||||||||||||  || ||||| |||||||||||||||||    
T  882776 attcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttt 882726  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 25195462 - 25195527
Alignment:
Q  265 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||| | ||||| | ||||| ||||||| |||||||||| ||||| || |||||||||||||    
T  25195462 aatcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaattttg 25195527  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 852622 - 852574
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    |||||||||||||||||||||||  || |||||  ||||||||||||||    
T  852622 attcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaatt 852574  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 6653925 - 6653856
Alignment:
Q  199 gtgatttgtatttggatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||| |||||||||| ||||||    |||||||||||||||||| || ||||| |||| ||| ||||||    
T  6653925 gtgatttgtgtttggatacaatcatat----gtaaaagtgagttaaactataaatttgcatgtgaaactcaatt 6653856  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 40491668 - 40491620
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  40491668 attcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaatt 40491620  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 17111862 - 17111797
Alignment:
Q  265 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||| | ||||||| ||||| ||||||| ||||||||||| |||  |||||||| |||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaattcgacatctctagaattaattttg 17111797  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 38123766 - 38123811
Alignment:
Q  285 aacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||| ||||||||| |||||||||||||  ||||||||||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttg 38123811  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 45004952 - 45004907
Alignment:
Q  285 aacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||| ||||||| | |||||||||||||| ||||||||||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttg 45004907  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 40582716 - 40582671
Alignment:
Q  285 aacctaacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||    
T  40582716 aaccaaacatgttaaaatcaattctacacctctagaatcaattttg 40582671  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 30503171 - 30503131
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  30503171 aacatgttagaatcaattctacacttccaaaatcaattttg 30503131  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 4778515 - 4778475
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  4778515 aacatgttaacatcaattctacacttctagaattaattttg 4778475  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 11759943 - 11759983
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  11759943 aacatgtcagaatcaattctacacttccggaatcaattttg 11759983  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 16013834 - 16013874
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  16013834 aacatgttaaaatcaattctacacctctagaataaattttg 16013874  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 32596083 - 32596031
Alignment:
Q  222 atattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 274  Q
    ||||| ||||||||||||||| || | |  |||||||||||||||||||||||    
T  32596083 atatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaatttt 32596031  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 7602202 - 7602254
Alignment:
Q  263 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacactt 315  Q
    |||||||||||| ||||||||||||| || || ||||| ||||||||||||||    
T  7602202 aaaatcaattttactcgaaaacaaccaaaaatattagattcaattctacactt 7602254  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 13384624 - 13384697
Alignment:
Q  199 gtgatttgtatttggatacattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||| ||| |||| |||||| |  ||||||||||||||| |||| || |||||| ||| ||||||||||    
T  13384624 gtgatttgtgttttgatatattcatgtaaatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 13384697  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 32927982 - 32927934
Alignment:
Q  224 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 272  Q
    ||||||||||||||||||| |||| || |||||| ||||||||| ||||    
T  32927982 attcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaatt 32927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 35495222 - 35495182
Alignment:
Q  290 aacatgttagaatcaattctacacttctagaatcaattttg 330  Q
    ||||||| | |||||||||||||||| ||||||||||||||    
T  35495222 aacatgtcaaaatcaattctacacttgtagaatcaattttg 35495182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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