View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_33 (Length: 439)
Name: NF3002_high_33
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 185 - 405
Target Start/End: Original strand, 25157973 - 25158196
Alignment:
| Q |
185 |
catttgcagcaggagcagttgtcatcgtcatcactttgtaagccggagggattcggccgcaaaatggaagaactggagtatgtctagtgaatactggcca |
284 |
Q |
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| T |
25157973 |
catttgcagcaggagcagtcgtcatcgtcatcactttgtaggccggagggattcggctgcaaaatggaagaactggagtatgtgtagtgaatactagcca |
25158072 |
T |
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| Q |
285 |
tgtttttctttggaaaagagaagaatttgattcaaattttctagttggtaaagttattgatgtgaagtaaagattgaacaaaaatatataaaggaatgta |
384 |
Q |
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| T |
25158073 |
tgtttttctttggaaaagagaagaatttgattcaagttttctagttggtaaagttattgatgtgaagtaaagattgaacaaaaatatataaaggaattta |
25158172 |
T |
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| Q |
385 |
tgtac---taattgcgtaacttgc |
405 |
Q |
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||||| |||||||||||||||| |
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| T |
25158173 |
tgtactaataattgcgtaacttgc |
25158196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 25157830 - 25157944
Alignment:
| Q |
9 |
atttgacgtagttagggtgtatgataagccatgagaagaaagcaaagattgctacgaccacaatgaagttgcagattacgtttaatacgtattcgcaaca |
108 |
Q |
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| T |
25157830 |
atttgacgtagttaggatgtatgataagccataagaagaaagcaaagattgctacgacaacattgaagttgcagattacgtttaatacatattcgcatca |
25157929 |
T |
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| Q |
109 |
gccgaagatagatat |
123 |
Q |
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| T |
25157930 |
gccgaagatagatat |
25157944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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