View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_37 (Length: 416)
Name: NF3002_high_37
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 3055218 - 3055614
Alignment:
| Q |
1 |
acaataaccgttttcaacgacccttttccttcatttccctccaccaaactcgtggtagagtttgaatcctccagattcgaactgaactcccacgaatgaa |
100 |
Q |
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| T |
3055218 |
acaataaccgttttcaacgacccttttccatcatttccctccaccaaactcgtggtagagtttgaatcctccagattcgaactgaactcccacgaatgaa |
3055317 |
T |
|
| Q |
101 |
taacattactttcggtagaaagacctgttgaagccgaaaatccaatattaacaaattcaggcaacttcttcataagatcaatttgataagaaattgaaga |
200 |
Q |
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| T |
3055318 |
taacattactttcggtagaaagacctgttgaagccgaaaatccaatattaacaaattcaggcaacttcttcataagatcaatttgataagaaattgaaga |
3055417 |
T |
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| Q |
201 |
attcccataacttccatcacctttcacaaaccttcccttaaaagaccaaaaaacttccaacatcttctcatcagaattataatcaatcaaaacataacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055418 |
attcccataacttccatcacctttcacaaaccttcccttaaaagaccaaaaaacttccaacatcttctcatcagaattataatcaatcaaaacataacat |
3055517 |
T |
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| Q |
301 |
accctaccaagattcttatcaatatcaaatttcccaaaagcaacagaagtcaaagcattatcatcaataccaacatgtttcattggtggatcagtgg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055518 |
accctaccaagattcttatcaatatcaaatttcccaaaagcaacagaagtcaaagcattatcatcaataccaacatgtttcattggtggatcagtgg |
3055614 |
T |
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