View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_4 (Length: 790)
Name: NF3002_high_4
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 280 - 548
Target Start/End: Complemental strand, 17147382 - 17147114
Alignment:
| Q |
280 |
ttacatatgatatgatatgatttccactttttcttacagacataatttctttgaaatcaataactagtagttgtttagatttactgttttaataagtagg |
379 |
Q |
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| T |
17147382 |
ttacatatgatatgatatgatttccactttttcttacagacataatttctttgaaatcaataactagtagttgtttagatttactgttttaataagtagg |
17147283 |
T |
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| Q |
380 |
ggactttgaacagtatattannnnnnnccatgcagtattcaataattttgtcctacatataataatttacattaaaggaccaagttggcctcacactgca |
479 |
Q |
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| T |
17147282 |
ggactttgaacagtatattatttttttccatgcagtattcaataattttgtcctacatataataatttacattaaaggaccaagttggcctcacactgca |
17147183 |
T |
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| Q |
480 |
ccccnnnnnnnnngtccattcagtccacaaagcagaaaccagttataaattcattgtcagtaacttaaa |
548 |
Q |
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| T |
17147182 |
ccccaaaaaaaaagtccattcagtccacaaagcagaaaccagttataaattcattgtcagtaacttaaa |
17147114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 628 - 770
Target Start/End: Complemental strand, 17147035 - 17146893
Alignment:
| Q |
628 |
gtgtattgagatagattcacaaacaaaattatagcatatagcaagagcaacaatggtggtgaaaaaaccaaagattgtgataattggagctggaatggca |
727 |
Q |
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| T |
17147035 |
gtgtattgagatagattcacaaacaaaattatagcatatagcaaaagcaacaatggtggtgaaaaaaccaaagattgtgataattggagctggaatggca |
17146936 |
T |
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| Q |
728 |
ggcttaacagcagcaaacaagctctacacttcaacagcttcaa |
770 |
Q |
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| T |
17146935 |
ggcttaacagcagcaaacaagctctacacttcaacagcttcaa |
17146893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 17147476 - 17147424
Alignment:
| Q |
9 |
gagatgaacaaaaatatgatggttcaattgtatgttgatacctcattttccat |
61 |
Q |
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| T |
17147476 |
gagaagaacaaaaatatgatggttcaattgtatattgatacctcattttccat |
17147424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 17147424 - 17147382
Alignment:
| Q |
212 |
tgagatatcaaacatacactatttgatgatgtatgttatatgt |
254 |
Q |
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| T |
17147424 |
tgagatatcaaacatagactatttgatgatgtatgttatatgt |
17147382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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