View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_40 (Length: 409)
Name: NF3002_high_40
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 44798981 - 44799360
Alignment:
| Q |
13 |
tgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactcttcaactagacctccaacacc |
112 |
Q |
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| T |
44798981 |
tgaaaagtgggaaaatcatcaatgcatggattgagtatagagatgatatgaaaatggttcgtgtttgggttagttactcttcaactagacctccaacacc |
44799080 |
T |
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| Q |
113 |
aattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttctaatggaaaaggttcaagtattcaccttgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44799081 |
aattattgcttcattcattgatctttctgagagatttaaagagtttatgcatgttggtttctctgcttctaatggaaaaggttcaagtattcaccttgtt |
44799180 |
T |
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| Q |
213 |
catcattggcagttcaaaactttgagttattctcattctgttagtccaatggataatgtagaagaaggtgactgtttcttgtgttatgccggtgattcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44799181 |
catcattggcagttcaaaactttgagttattctcattctgttggtccaatggataatgtagaagaaggtgactgtttcttgtgttatgctggtgattcaa |
44799280 |
T |
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| Q |
313 |
aagcatcgaagaaaaaaggtgaaaa-ttctaggacaaatattagtgagatagctcttggaattggtggcataacagctttt |
392 |
Q |
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| T |
44799281 |
aagcatcgaagaaaaaaggtgaaaatttctaggac-aatattagtgagatagctcttggaattggtggcataacagctttt |
44799360 |
T |
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