View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_high_42 (Length: 405)

Name: NF3002_high_42
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_high_42
NF3002_high_42
[»] chr1 (1 HSPs)
chr1 (10-386)||(43434777-43435166)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 43435166 - 43434777
Alignment:
Q  10 attatacttggatcaaaaaggccattttgggatttgtgtgaagtgggtgtatatataaatacacaaaggatattgaagttaatttgtatttatatgcgtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43435166 attatacttggatcaaaaaggccattttgggatttgtgtgaagtgggtgtatatataaatacacaaaggatattgaagttaatttgtatttatatgcgtc 43435067  T
Q  110 acattaagcctagattagatatgttagattaccaactatattgtacttttcaatggtttgttgtcttattcagattgggttctttaatttaatgcaaaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43435066 acattaagcctagattagatatgttagattaccaactatattgtacttttcaatggtttgttgtcttattcagattgggttctttaatttaatgcaaaaa 43434967  T
Q  210 ttagctgcaaatctagtacataactcatatttttatctt-------------nnnnnnnnnctctttatttcttgtaaataatcccttgtttttatttat 296  Q
    |||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||| |||||||||||    
T  43434966 ttagctgcaaatctagtacataactcatatttttatcttaaaaaaaaaaaaaaaaaaaaaactctttatttcttgtaaataatcccttatttttatttat 43434867  T
Q  297 tacaagaagagtagtgatcgatagccgaaagcttactatatacatgtatctgagtgtaacataccaaaataccatattatatacaccccc 386  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43434866 tacaagaagagtactgatcgatagccgaaagcttactatatacatgtatctgagtgtaacataccaaaataccatattatatacaccccc 43434777  T

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