View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_43 (Length: 403)
Name: NF3002_high_43
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 2567963 - 2567722
Alignment:
| Q |
21 |
ggcgtaacagagctcttgatcggtgaaaaactttagcgacgaatttcgaagatcttccattggagaaagtgaaatgaaatggtttttcgaaattttgatt |
120 |
Q |
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| T |
2567963 |
ggcgtaacagagctcttgatcggtgaaaaactttagcgacgaatttcgaagatcttccattggagagagtgaaataaaatggtttttcgaaattttgatt |
2567864 |
T |
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| Q |
121 |
gcagtgtgatttggcgcgcaaatctgaagaatgtgatcgttttctggtgaaatataactgcatgtcgtttagcggtatacataaacgactgtcgttttgt |
220 |
Q |
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| T |
2567863 |
gcagtgtgatttggcgcgcaaatctgaagaatgtgatcgttttctggtgaaatataactgcatgtcgtttagcggtatacataaacgactgtcgttttgt |
2567764 |
T |
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| Q |
221 |
ttctttnnnnnnnnnttaataaatgcggtcgttttgttgatga |
263 |
Q |
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| T |
2567763 |
ttcttt-aaaaaaaattaataaatgcggtcgttttattgatga |
2567722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 2567184 - 2567070
Alignment:
| Q |
273 |
caaggtacatttgagatattcacacaactatctcactttcatccccatattttattttcttccgagttttaaacgtttatcctcaaattannnnnnnnat |
372 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |
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| T |
2567184 |
caaggtgcatttgagatattcacacaactatctcactttcatccccatattttattttcttccgag-tttaaacttttatcctcaaattatttattttat |
2567086 |
T |
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| Q |
373 |
cctcaaatatattcat |
388 |
Q |
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| T |
2567085 |
cctcaaatatattcat |
2567070 |
T |
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