View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_49 (Length: 384)
Name: NF3002_high_49
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 5 - 374
Target Start/End: Original strand, 34568760 - 34569129
Alignment:
| Q |
5 |
tcaccaagagtcgatttctaaatttcgtacctaaaatgaatctgcaagcaaaaatattagactctcttctatggaacaataacaataaccaacttgataa |
104 |
Q |
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| T |
34568760 |
tcaccaagagccgatttctcaatttcgtacctaaaatgaatctgcaagcaaaaatattagactctcttctatggaacaataacaataaccaactttataa |
34568859 |
T |
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| Q |
105 |
aaaatacaatataagactgagttttaaatttagcatacacgaaagtgatcggaaaatggaacaccattgaggatcataacttcattcacaatccatcctt |
204 |
Q |
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| T |
34568860 |
caaatacaatataagactgagttttaaatttagcatacacgaaagtgatcggaaaatggaacaccattgaggatcataacttcattcacaatccatcctt |
34568959 |
T |
|
| Q |
205 |
cagtgtttgtatttggatatttttgttgtgtgcttgtaacatcaaaaactgacacatgccggttaaattggtacgtaacatgcctttcgagtacatcagg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34568960 |
cagtgtttgtatttggatatttttgttgtgtgcttgtaacatcaaaaactgacacatgccggttaaattggtacgtaacatgcctttcgagtacatcagg |
34569059 |
T |
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| Q |
305 |
ttttactggttcccaaggtgtagtgtcatagtccatacaaccggttcttttcataatcttatgccctatg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34569060 |
ttttactggttcccaaggtgtagtgtcatagtccatacaaccggttcttttcataatcttatgctctatg |
34569129 |
T |
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