View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3002_high_52 (Length: 378)
Name: NF3002_high_52
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_52 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 67 - 362
Target Start/End: Original strand, 34971793 - 34972088
Alignment:
| Q |
67 |
atgtacctataattttattattttgagtaaaagttaataagataacgttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaata |
166 |
Q |
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| T |
34971793 |
atgtacctataattttattattttgagtaaaagttaataagataacgttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaata |
34971892 |
T |
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| Q |
167 |
ttcaaaacgttgaaattgagaggatcttccttcaattttttcctctcagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaata |
266 |
Q |
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| T |
34971893 |
ttcaaaacgttgaaattgagaggatcttccttcaattttttcctctcagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaata |
34971992 |
T |
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| Q |
267 |
tcaaattctctgtaacttttccccttatatttttcatcctcttacttctttctgagtttttcccatcacttttcaatgggaggaatgaggtgtaag |
362 |
Q |
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| T |
34971993 |
tcaaattctctgtaacttttccccttatctttttcatcctcttacttctttctgagtttttcccatcacttttcaatgggaggaatgaggtgtaag |
34972088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 113 - 362
Target Start/End: Original strand, 34953130 - 34953379
Alignment:
| Q |
113 |
gttaatgaataatggaattaacagaaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctct |
212 |
Q |
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| T |
34953130 |
gttaatgaataatggaatgaactgaaatctaacctgataacttcaacaacaatattcaaaacgttgaaattaagaggatcttccttcaattttttcctct |
34953229 |
T |
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| Q |
213 |
cagttatgcacactagaatgatgaatatgactaaataggagagttgagaaaatatcaaattctctgtaacttttccccttatatttttcatcctcttact |
312 |
Q |
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| T |
34953230 |
cagttatgcatactagaatgatgaatatgactaaataggagagttgagaaaatatcaaattctctgtaacttttcctcttctctttttcatcttcttact |
34953329 |
T |
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| Q |
313 |
tctttctgagtttttcccatcacttttcaatgggaggaatgaggtgtaag |
362 |
Q |
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| T |
34953330 |
gttttctgaaattttcccatcatatttcaatgggaggaatgaggtgtaag |
34953379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 35032698 - 35032847
Alignment:
| Q |
137 |
aaatctaaccttacaacttcaacaacaatattcaaaacgttgaaattgagaggatcttccttcaattttttcctctcagttatgcacactagaatgatga |
236 |
Q |
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||||||||||| |||||||||||| ||||||| || || ||||||||||| ||||| |||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
35032698 |
aaatctaacctgacaacttcaacagcaatattgaagacattgaaattgagtggatcgtccttcaattgtttcctctcagttatgcaaactagtatgatga |
35032797 |
T |
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| Q |
237 |
atatgactaaataggagagttgagaaaatatcaaattctctgtaactttt |
286 |
Q |
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| T |
35032798 |
aaatgactaaataagatattcgagataatattttattctctgttactttt |
35032847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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