View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3002_high_54 (Length: 374)
Name: NF3002_high_54
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3002_high_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 137 - 369
Target Start/End: Original strand, 36192346 - 36192593
Alignment:
| Q |
137 |
ttgcagacctgttcaaaaaagcgtttgaagcaatcttcaaatttcattccaactgtaataaattttcattctcattcaccaagtcaactcaactcatctc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
|
|
| T |
36192346 |
ttgcagacctgttcaaaaaagcgtttgaagcaatcttgaaatttcattccaactgtaataaattttcattttcattcaccaagtcaagtcaactcaactc |
36192445 |
T |
|
| Q |
237 |
a-----------tatcaataacaagttttca----attcaaatcaaacttcccatctctttagccaataattccacactttgacccaaacccaattctca |
321 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36192446 |
aactcacctccatatcaataacaagttttcattcaattcaaatcaaacttcccatctctttagccaataattccccactttgacccaaacccaattctca |
36192545 |
T |
|
| Q |
322 |
tctcccaaacttttttcaatggaacatcaacccagattcacctccttc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36192546 |
tctcccaaacttttttcaatggaacatcaacccagattcacctccttc |
36192593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University