View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3002_high_6 (Length: 720)

Name: NF3002_high_6
Description: NF3002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3002_high_6
NF3002_high_6
[»] chr2 (1 HSPs)
chr2 (23-710)||(3638740-3639423)


Alignment Details
Target: chr2 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 23 - 710
Target Start/End: Complemental strand, 3639423 - 3638740
Alignment:
Q  23 cggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtggga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639423 cggatttgatgagacgcgcgtggatttcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtggga 3639324  T
Q  123 agaagaacaagagagcatttgattgcagaggttgaagaaagctttgccattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattgggga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639323 agaagaacaagagagcatttgattgcagaggttgaagaaagctttgacattatcgtgtgattttgaaagaagtttaaggttttgatttaacaattgggga 3639224  T
Q  223 ttagggtttatgatttgaaattgagcgagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtattta 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639223 ttagggtttatgatttgaaattgagagagcttcgctatttgattcagattctgaggcttcatttgtattcttgttaatctgaagctccatttagtattta 3639124  T
Q  323 gtttagatgagttgggtggtctcgactcgagagtagtagtaacttgtaacagtcatgcttgagtt---agaagttgggggaaaattgcatttttccctcc 419  Q
    |||||||||||| ||||||||     |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  3639123 gtttagatgagtcgggtggtc-----tcgagagtagtagtaactagtaacagtcatgcttgagttagaagaagttgggggaaaattgtatttttccctcc 3639029  T
Q  420 aacccggaatgtatttgggttataaaatcgtccgggtcgtgtgtgtttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttcc 519  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639028 aacccggaatgtatttgggttataaaatcgtccgggtc--gtgtgtttaaacgggtcggtccggtttattatgcaaataaaattacccggttttgtttcc 3638931  T
Q  520 aaaaacacttttgcctcctaagttcatagcttcttcaatcacctctcgtacactgtacgagattcttagtgcaattcgattttgctcatttgaactcttg 619  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  3638930 aaaaacacttttgcctcctaagttcatagcttcttcaattacctctcgtacactgtacgagattcttagtacaattcgattttgctcatttaaactcttg 3638831  T
Q  620 tattcgtttttgtgtgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg 710  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3638830 tattcgtttttgtctgccagtagcgtgtgattctgtgaaatttgttggatagtttgattcaggagaaaaggtttgtagttttatgcctatg 3638740  T

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